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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   CHB3   DNA-binding family protein 
 ath-r.7   CHB3   DNA-binding family protein 
 ath-m.9   CHB3   DNA-binding family protein 
 ath-e.2   CHB3   DNA-binding family protein 
 ath-m.4.bio   CHB3   DNA-binding family protein 
 ath-m.4.hor   CHB3   DNA-binding family protein 
 ath-m.4.lig   CHB3   DNA-binding family protein 
 ath-m.4.str   CHB3   DNA-binding family protein 
 ath-m.4.tis   CHB3   DNA-binding family protein 
 gma-u.5   100786881   SWI/SNF complex subunit SWI3D 
 gma-u.5   100799723   SWI/SNF complex subunit SWI3D 
 vvi-u.5   100855339   SWI/SNF complex subunit SWI3D 
 ppo-u.5   7456382   SWI/SNF complex subunit SWI3D 
 ppo-u.5   7469985   SWI/SNF complex subunit SWI3D 
 mtr-u.5   11441086   SWI/SNF complex subunit SWI3D 
 sly-u.5   SWI3D   SWI/SNF complex subunit SWI3D 
 osa-u.5   4333941   SWI/SNF complex subunit SWI3D 
 osa-u.5   4334928   SWI/SNF complex subunit SWI3D 
 zma-u.5   103643932   SWI/SNF complex subunit SWI3D 
 zma-u.5   103625928   SWI/SNF complex subunit SWI3D 

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Top 50 coexpressed genes to CHB3 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHB3 (ath-u.5 coexpression data)

CoexMap"829594"


athCHB3 | Entrez gene ID : 829594      
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 9 2 1 2 1 1 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03082 [list] [network] ATP-dependent chromatin remodeling (64 genes)
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0008270 [list] [network] zinc ion binding  (391 genes)  IEA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_195169.3 [sequence] [blastp]
NP_849563.1 [sequence] [blastp]
NP_849564.1 [sequence] [blastp]
NP_974682.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_195169.3)
nucl 10  (predict for NP_849563.1)
nucl 10  (predict for NP_849564.1)
nucl 10  (predict for NP_974682.1)
Subcellular
localization
TargetP
chlo 6,  other 4  (predict for NP_195169.3)
chlo 6,  other 4  (predict for NP_849563.1)
chlo 6,  other 4  (predict for NP_849564.1)
chlo 6,  other 4  (predict for NP_974682.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
CHB3

.
ath-r.7
for
CHB3

.
ath-m.9
for
CHB3

.
ath-e.2
for
CHB3

.
ath-m.4.bio
for
CHB3

.
ath-m.4.hor
for
CHB3

.
ath-m.4.lig
for
CHB3

.
ath-m.4.str
for
CHB3

.
ath-m.4.tis
for
CHB3

.
gma-u.5
for
100786881

.
gma-u.5
for
100799723

.
vvi-u.5
for
100855339

.
ppo-u.5
for
7456382

.
ppo-u.5
for
7469985

.
mtr-u.5
for
11441086

.
sly-u.5
for
SWI3D

.
osa-u.5
for
4333941

.
osa-u.5
for
4334928

.
zma-u.5
for
103643932

.
zma-u.5
for
103625928

.


Ortholog ID: 6632
Species ath gma gma sly osa osa zma zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna sbi sbi sot cit bdi nta nta
Symbol CHB3 LOC100786881 LOC100799723 SWI3D LOC4334928 LOC4333941 LOC103643932 LOC103625928 LOC103834415 LOC103837926 LOC100855339 LOC7456382 LOC7469985 LOC11441086 LOC123095930 LOC123087059 LOC123447589 LOC107949076 LOC107927945 LOC106354692 LOC106434471 LOC8063359 LOC8065962 LOC102582052 LOC102609330 LOC100842810 LOC107793442 LOC107828862
Function* DNA-binding family protein SWI/SNF complex subunit SWI3D SWI/SNF complex subunit SWI3D SWI/SNF complex subunit SWI3D SWI/SNF complex subunit SWI3D SWI/SNF complex subunit SWI3D SWI/SNF complex subunit SWI3D SWI/SNF complex subunit SWI3D SWI/SNF complex subunit SWI3D SWI/SNF complex subunit SWI3D SWI/SNF complex subunit SWI3D SWI/SNF complex subunit SWI3D SWI/SNF complex subunit SWI3D SWI/SNF complex subunit SWI3D SWI/SNF complex subunit SWI3D SWI/SNF complex subunit SWI3D SWI/SNF complex subunit SWI3D SWI/SNF complex subunit SWI3D SWI/SNF complex subunit SWI3D SWI/SNF complex subunit SWI3D SWI/SNF complex subunit SWI3D SWI/SNF complex subunit SWI3D SWI/SNF complex subunit SWI3D SWI/SNF complex subunit SWI3D SWI/SNF complex subunit SWI3D SWI/SNF complex subunit SWI3D SWI/SNF complex subunit SWI3D-like SWI/SNF complex subunit SWI3D
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 6
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
bra03013 Nucleocytoplasmic transport 3
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 3
ppo04120 Ubiquitin mediated proteolysis 2
ppo04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 5
tae00270 Cysteine and methionine metabolism 3
tae00330 Arginine and proline metabolism 3
tae00480 Glutathione metabolism 3
tae04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae03015 mRNA surveillance pathway 3
tae03082 ATP-dependent chromatin remodeling 3
tae00270 Cysteine and methionine metabolism 2
tae00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 4
bna03040 Spliceosome 4
bna04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 4
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 2
nta03082 ATP-dependent chromatin remodeling 2
nta04075 Plant hormone signal transduction 2
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta04120 Ubiquitin mediated proteolysis 2
nta03082 ATP-dependent chromatin remodeling 2
nta04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829594 100786881 100799723 101265486 4334928 4333941 103643932 103625928 103834415 103837926 100855339 7456382 7469985 11441086 123095930 123087059 123447589 107949076 107927945 106354692 106434471 8063359 8065962 102582052 102609330 100842810 107793442 107828862
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