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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PSAT   phosphoserine aminotransferase 
 ath-r.7   PSAT   phosphoserine aminotransferase 
 ath-m.9   PSAT   phosphoserine aminotransferase 
 ath-e.2   PSAT   phosphoserine aminotransferase 
 ath-m.4.bio   PSAT   phosphoserine aminotransferase 
 ath-m.4.hor   PSAT   phosphoserine aminotransferase 
 ath-m.4.lig   PSAT   phosphoserine aminotransferase 
 ath-m.4.str   PSAT   phosphoserine aminotransferase 
 ath-m.4.tis   PSAT   phosphoserine aminotransferase 
 ath-u.5   AT2G17630   Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 
 bra-r.6   103837814   phosphoserine aminotransferase 2, chloroplastic 
 bra-r.6   103834946   phosphoserine aminotransferase 1, chloroplastic 
 bna-r.1   125583792   phosphoserine aminotransferase 1, chloroplastic-like 
 bna-r.1   106436619   phosphoserine aminotransferase 1, chloroplastic 
 bna-r.1   106361282   phosphoserine aminotransferase 1, chloroplastic 
 ghi-r.1   107955620   phosphoserine aminotransferase 2, chloroplastic 
 ghi-r.1   107955090   phosphoserine aminotransferase 2, chloroplastic 
 cit-r.1   102627208   phosphoserine aminotransferase 2, chloroplastic-like 
 gma-u.5   100779355   phosphoserine aminotransferase 1, chloroplastic 
 gma-u.5   100795286   phosphoserine aminotransferase 2, chloroplastic 
 gma-u.5   100798600   phosphoserine aminotransferase 1, chloroplastic 
 vvi-u.5   100854216   phosphoserine aminotransferase 2, chloroplastic 
 ppo-u.5   7492121   phosphoserine aminotransferase 2, chloroplastic 
 mtr-u.5   11443166   phosphoserine aminotransferase 2, chloroplastic 
 sly-u.5   101254553   phosphoserine aminotransferase 2, chloroplastic-like 
 sot-r.1   102591400   phosphoserine aminotransferase 2, chloroplastic 
 nta-r.1   107804364   phosphoserine aminotransferase 2, chloroplastic 
 nta-r.1   107777146   phosphoserine aminotransferase 2, chloroplastic-like 
 osa-u.5   9270715   phosphoserine aminotransferase 1, chloroplastic 
 zma-u.5   100284817   uncharacterized LOC100284817 
 tae-r.2   123098468   phosphoserine aminotransferase 1, chloroplastic 
 tae-r.2   123093205   phosphoserine aminotransferase 1, chloroplastic 
 tae-r.2   123084884   phosphoserine aminotransferase 1, chloroplastic 
 hvu-r.1   123449487   phosphoserine aminotransferase 1, chloroplastic-like 
 sbi-r.1   110431746   phosphoserine aminotransferase 2, chloroplastic-like 
 bdi-r.1   100842280   phosphoserine aminotransferase 1, chloroplastic 
 cre-r.1   CHLRE_07g331550v5   uncharacterized protein 

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Top 50 coexpressed genes to PSAT (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PSAT (ath-u.5 coexpression data)

CoexMap"829715"


athPSAT | Entrez gene ID : 829715      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 2 3 2 1 3 1 1 1 1 1 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00260 [list] [network] Glycine, serine and threonine metabolism (70 genes)
ath00270 [list] [network] Cysteine and methionine metabolism (125 genes)
ath00750 [list] [network] Vitamin B6 metabolism (15 genes)
ath01200 [list] [network] Carbon metabolism (275 genes)
ath01230 [list] [network] Biosynthesis of amino acids (242 genes)
ath01240 [list] [network] Biosynthesis of cofactors (237 genes)
GO BP
GO:0006564 [list] [network] L-serine biosynthetic process  (6 genes)  TAS  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  RCA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA IDA ISM  
GO:0009536 [list] [network] plastid  (5443 genes)  HDA  
GO MF
GO:0004648 [list] [network] O-phospho-L-serine:2-oxoglutarate aminotransferase activity  (1 genes)  IDA IGI  
GO:0030170 [list] [network] pyridoxal phosphate binding  (25 genes)  IDA  
GO:0042803 [list] [network] protein homodimerization activity  (237 genes)  IDA  
Protein NP_195288.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for NP_195288.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_195288.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PSAT
ath-r.7
for
PSAT
ath-m.9
for
PSAT
ath-e.2
for
PSAT
ath-m.4.bio
for
PSAT
ath-m.4.hor
for
PSAT
ath-m.4.lig
for
PSAT
ath-m.4.str
for
PSAT
ath-m.4.tis
for
PSAT
ath-u.5
for
AT2G17630
bra-r.6
for
103837814
bra-r.6
for
103834946
bna-r.1
for
125583792
bna-r.1
for
106436619
bna-r.1
for
106361282
ghi-r.1
for
107955620
ghi-r.1
for
107955090
cit-r.1
for
102627208
gma-u.5
for
100779355
gma-u.5
for
100795286
gma-u.5
for
100798600
vvi-u.5
for
100854216
ppo-u.5
for
7492121
mtr-u.5
for
11443166
sly-u.5
for
101254553
sot-r.1
for
102591400
nta-r.1
for
107804364
nta-r.1
for
107777146
osa-u.5
for
9270715
zma-u.5
for
100284817
tae-r.2
for
123098468
tae-r.2
for
123093205
tae-r.2
for
123084884
hvu-r.1
for
123449487
sbi-r.1
for
110431746
bdi-r.1
for
100842280
cre-r.1
for
CHLRE_07g331550v5


Ortholog ID: 7153
Species ath ath bra bra bna bna bna ghi ghi cit gma gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol PSAT AT2G17630 LOC103837814 LOC103834946 LOC106436619 LOC106401135 LOC106366377 LOC107955620 LOC107955090 LOC102627208 LOC100779355 LOC100795286 LOC100798600 LOC100854216 LOC7492121 LOC11443166 LOC101254553 LOC102591400 LOC107804364 LOC107777146 LOC9270715 LOC100284817 LOC123098468 LOC123093205 LOC123084884 LOC123449487 LOC110431746 LOC100842280 CHLRE_07g331550v5
Function* phosphoserine aminotransferase Pyridoxal phosphate (PLP)-dependent transferases superfamily protein phosphoserine aminotransferase 2, chloroplastic phosphoserine aminotransferase 1, chloroplastic phosphoserine aminotransferase 1, chloroplastic phosphoserine aminotransferase 2, chloroplastic phosphoserine aminotransferase 2, chloroplastic phosphoserine aminotransferase 2, chloroplastic phosphoserine aminotransferase 2, chloroplastic phosphoserine aminotransferase 2, chloroplastic-like phosphoserine aminotransferase 1, chloroplastic phosphoserine aminotransferase 2, chloroplastic phosphoserine aminotransferase 1, chloroplastic phosphoserine aminotransferase 2, chloroplastic phosphoserine aminotransferase 2, chloroplastic phosphoserine aminotransferase 2, chloroplastic phosphoserine aminotransferase 2, chloroplastic-like phosphoserine aminotransferase 2, chloroplastic phosphoserine aminotransferase 2, chloroplastic phosphoserine aminotransferase 2, chloroplastic-like phosphoserine aminotransferase 1, chloroplastic uncharacterized LOC100284817 phosphoserine aminotransferase 1, chloroplastic phosphoserine aminotransferase 1, chloroplastic phosphoserine aminotransferase 1, chloroplastic phosphoserine aminotransferase 1, chloroplastic-like phosphoserine aminotransferase 2, chloroplastic-like phosphoserine aminotransferase 1, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 14
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
ath00260 Glycine, serine and threonine metabolism 6
ath00270 Cysteine and methionine metabolism 6
ath01200 Carbon metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 8
ath01200 Carbon metabolism 3
ath00270 Cysteine and methionine metabolism 2
ath01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 9
bra01230 Biosynthesis of amino acids 8
bra00260 Glycine, serine and threonine metabolism 8
bra00270 Cysteine and methionine metabolism 5
bra01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 12
bra00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
bra00260 Glycine, serine and threonine metabolism 6
bra00270 Cysteine and methionine metabolism 4
bra01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01230 Biosynthesis of amino acids 14
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
bna00260 Glycine, serine and threonine metabolism 7
bna00270 Cysteine and methionine metabolism 5
bna00750 Vitamin B6 metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00260 Glycine, serine and threonine metabolism 12
bna01230 Biosynthesis of amino acids 12
bna00270 Cysteine and methionine metabolism 11
bna01200 Carbon metabolism 11
bna00750 Vitamin B6 metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01230 Biosynthesis of amino acids 13
bna00260 Glycine, serine and threonine metabolism 11
bna00270 Cysteine and methionine metabolism 9
bna01200 Carbon metabolism 9
bna00750 Vitamin B6 metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00270 Cysteine and methionine metabolism 8
ghi00670 One carbon pool by folate 6
ghi00190 Oxidative phosphorylation 2
ghi00260 Glycine, serine and threonine metabolism 2
ghi00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00270 Cysteine and methionine metabolism 8
ghi00670 One carbon pool by folate 6
ghi00260 Glycine, serine and threonine metabolism 2
ghi00750 Vitamin B6 metabolism 2
ghi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 8
cit01230 Biosynthesis of amino acids 8
cit00270 Cysteine and methionine metabolism 4
cit00020 Citrate cycle (TCA cycle) 3
cit00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 4
gma00260 Glycine, serine and threonine metabolism 3
gma00270 Cysteine and methionine metabolism 3
gma00750 Vitamin B6 metabolism 3
gma01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 11
gma01230 Biosynthesis of amino acids 8
gma00260 Glycine, serine and threonine metabolism 6
gma00270 Cysteine and methionine metabolism 5
gma00030 Pentose phosphate pathway 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 3
gma00260 Glycine, serine and threonine metabolism 2
gma00270 Cysteine and methionine metabolism 2
gma00750 Vitamin B6 metabolism 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 13
vvi01230 Biosynthesis of amino acids 13
vvi00010 Glycolysis / Gluconeogenesis 11
vvi00710 Carbon fixation by Calvin cycle 7
vvi00030 Pentose phosphate pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00270 Cysteine and methionine metabolism 10
ppo01230 Biosynthesis of amino acids 9
ppo01200 Carbon metabolism 7
ppo00670 One carbon pool by folate 6
ppo01240 Biosynthesis of cofactors 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01240 Biosynthesis of cofactors 3
mtr00270 Cysteine and methionine metabolism 3
mtr01230 Biosynthesis of amino acids 3
mtr00061 Fatty acid biosynthesis 2
mtr00780 Biotin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 5
sly00270 Cysteine and methionine metabolism 4
sly01230 Biosynthesis of amino acids 4
sly00190 Oxidative phosphorylation 3
sly01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00270 Cysteine and methionine metabolism 6
sot00670 One carbon pool by folate 5
sot01230 Biosynthesis of amino acids 5
sot01240 Biosynthesis of cofactors 4
sot03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01230 Biosynthesis of amino acids 13
nta01200 Carbon metabolism 10
nta00670 One carbon pool by folate 9
nta00270 Cysteine and methionine metabolism 9
nta01240 Biosynthesis of cofactors 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01230 Biosynthesis of amino acids 13
nta01200 Carbon metabolism 10
nta00670 One carbon pool by folate 9
nta00270 Cysteine and methionine metabolism 9
nta01240 Biosynthesis of cofactors 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 7
osa01230 Biosynthesis of amino acids 7
osa00030 Pentose phosphate pathway 3
osa00260 Glycine, serine and threonine metabolism 3
osa00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00270 Cysteine and methionine metabolism 10
zma01230 Biosynthesis of amino acids 9
zma00670 One carbon pool by folate 7
zma01240 Biosynthesis of cofactors 5
zma01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 12
tae00260 Glycine, serine and threonine metabolism 8
tae00270 Cysteine and methionine metabolism 6
tae01200 Carbon metabolism 6
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 10
tae00260 Glycine, serine and threonine metabolism 9
tae00750 Vitamin B6 metabolism 6
tae00270 Cysteine and methionine metabolism 6
tae01200 Carbon metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 10
tae00260 Glycine, serine and threonine metabolism 7
tae00270 Cysteine and methionine metabolism 6
tae01200 Carbon metabolism 6
tae00750 Vitamin B6 metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 7
hvu01200 Carbon metabolism 6
hvu00270 Cysteine and methionine metabolism 4
hvu00260 Glycine, serine and threonine metabolism 4
hvu00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01200 Carbon metabolism 6
sbi00260 Glycine, serine and threonine metabolism 4
sbi00270 Cysteine and methionine metabolism 4
sbi01230 Biosynthesis of amino acids 4
sbi00670 One carbon pool by folate 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 7
bdi01200 Carbon metabolism 5
bdi00260 Glycine, serine and threonine metabolism 3
bdi00270 Cysteine and methionine metabolism 3
bdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01200 Carbon metabolism 4
cre00500 Starch and sucrose metabolism 4
cre01230 Biosynthesis of amino acids 3
cre00030 Pentose phosphate pathway 3
cre00230 Purine metabolism 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829715 816270 103837814 103834946 106436619 106401135 106366377 107955620 107955090 102627208 100779355 100795286 100798600 100854216 7492121 11443166 101254553 102591400 107804364 107777146 9270715 100284817 123098468 123093205 123084884 123449487 110431746 100842280 5716096
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