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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   SPC98   spindle pole body component 98 
 ath-r.7   SPC98   spindle pole body component 98 
 ath-m.9   SPC98   spindle pole body component 98 
 ath-e.2   SPC98   spindle pole body component 98 
 ath-m.4.bio   SPC98   spindle pole body component 98 
 ath-m.4.hor   SPC98   spindle pole body component 98 
 ath-m.4.lig   SPC98   spindle pole body component 98 
 ath-m.4.str   SPC98   spindle pole body component 98 
 ath-m.4.tis   SPC98   spindle pole body component 98 
 bra-r.6   103850631   gamma-tubulin complex component 3 
 bra-r.6   103847006   gamma-tubulin complex component 3 
 bna-r.1   106422800   gamma-tubulin complex component 3 
 bna-r.1   106397277   gamma-tubulin complex component 3-like 
 ghi-r.1   107899394   gamma-tubulin complex component 3 
 ghi-r.1   107948575   gamma-tubulin complex component 3 
 cit-r.1   102620528   gamma-tubulin complex component 3 
 gma-u.5   100811956   gamma-tubulin complex component 3 
 gma-u.5   100784710   gamma-tubulin complex component 3 
 vvi-u.5   100245188   gamma-tubulin complex component 3 
 ppo-u.5   7488037   gamma-tubulin complex component 3 
 ppo-u.5   7455634   gamma-tubulin complex component 3 
 mtr-u.5   11437941   gamma-tubulin complex component 3 
 sly-u.5   101243735   gamma-tubulin complex component 3 
 sot-r.1   102592969   gamma-tubulin complex component 3 
 nta-r.1   107823784   gamma-tubulin complex component 3-like 
 nta-r.1   107817410   gamma-tubulin complex component 3-like 
 osa-u.5   4347202   gamma-tubulin complex component 3 
 zma-u.5   100280166   Gamma-tubulin complex component 3 
 tae-r.2   123112152   gamma-tubulin complex component 3 
 tae-r.2   123121662   gamma-tubulin complex component 3 
 tae-r.2   123132195   gamma-tubulin complex component 3 
 hvu-r.1   123398410   gamma-tubulin complex component 3-like 
 hvu-r.1   123403059   gamma-tubulin complex component 3-like 
 sbi-r.1   8081016   gamma-tubulin complex component 3 
 bdi-r.1   100836813   gamma-tubulin complex component 3 
 cre-r.1   CHLRE_11g467745v5   uncharacterized protein 

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Top 50 coexpressed genes to SPC98 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SPC98 (ath-u.5 coexpression data)

CoexMap"830557"


athSPC98 | Entrez gene ID : 830557      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 2 2 1 2 1 2 1 1 1 2 1 1 3 2 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0090063 [list] [network] positive regulation of microtubule nucleation  (2 genes)  IDA  
GO:0007020 [list] [network] microtubule nucleation  (13 genes)  TAS  
GO:0009624 [list] [network] response to nematode  (90 genes)  IDA  
GO CC
GO:0000930 [list] [network] gamma-tubulin complex  (3 genes)  IDA  
GO:0009898 [list] [network] cytoplasmic side of plasma membrane  (20 genes)  IDA  
GO:0055028 [list] [network] cortical microtubule  (50 genes)  IDA  
GO:0005819 [list] [network] spindle  (58 genes)  IDA  
GO:0005938 [list] [network] cell cortex  (80 genes)  IDA  
GO:0005635 [list] [network] nuclear envelope  (107 genes)  IDA  
GO:0005874 [list] [network] microtubule  (116 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA  
GO MF
GO:0015631 [list] [network] tubulin binding  (111 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_196286.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 2,  cyto 2,  cysk_nucl 2  (predict for NP_196286.1)
Subcellular
localization
TargetP
other 7,  chlo 3  (predict for NP_196286.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
SPC98
ath-r.7
for
SPC98
ath-m.9
for
SPC98
ath-e.2
for
SPC98
ath-m.4.bio
for
SPC98
ath-m.4.hor
for
SPC98
ath-m.4.lig
for
SPC98
ath-m.4.str
for
SPC98
ath-m.4.tis
for
SPC98
bra-r.6
for
103850631
bra-r.6
for
103847006
bna-r.1
for
106422800
bna-r.1
for
106397277
ghi-r.1
for
107899394
ghi-r.1
for
107948575
cit-r.1
for
102620528
gma-u.5
for
100811956
gma-u.5
for
100784710
vvi-u.5
for
100245188
ppo-u.5
for
7488037
ppo-u.5
for
7455634
mtr-u.5
for
11437941
sly-u.5
for
101243735
sot-r.1
for
102592969
nta-r.1
for
107823784
nta-r.1
for
107817410
osa-u.5
for
4347202
zma-u.5
for
100280166
tae-r.2
for
123112152
tae-r.2
for
123121662
tae-r.2
for
123132195
hvu-r.1
for
123398410
hvu-r.1
for
123403059
sbi-r.1
for
8081016
bdi-r.1
for
100836813
cre-r.1
for
CHLRE_11g467745v5


Ortholog ID: 6954
Species ath bra bra bna bna ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma tae tae tae hvu hvu sbi bdi cre
Symbol SPC98 LOC103850631 LOC103847006 LOC106422800 LOC106397277 LOC107899394 LOC107948575 LOC102620528 LOC100811956 LOC100784710 LOC100245188 LOC7488037 LOC7455634 LOC11437941 LOC101243735 LOC102592969 LOC107823784 LOC107817410 LOC4347202 LOC100280166 LOC123132195 LOC123143729 LOC123103918 LOC123398410 LOC123403059 LOC8081016 LOC100836813 CHLRE_11g467745v5
Function* spindle pole body component 98 gamma-tubulin complex component 3 gamma-tubulin complex component 3 gamma-tubulin complex component 3 gamma-tubulin complex component 3-like gamma-tubulin complex component 3 gamma-tubulin complex component 3 gamma-tubulin complex component 3 gamma-tubulin complex component 3 gamma-tubulin complex component 3 gamma-tubulin complex component 3 gamma-tubulin complex component 3 gamma-tubulin complex component 3 gamma-tubulin complex component 3 gamma-tubulin complex component 3 gamma-tubulin complex component 3 gamma-tubulin complex component 3-like gamma-tubulin complex component 3-like gamma-tubulin complex component 3 Gamma-tubulin complex component 3 gamma-tubulin complex component 3 gamma-tubulin complex component 3 gamma-tubulin complex component 3 gamma-tubulin complex component 3-like gamma-tubulin complex component 3-like gamma-tubulin complex component 3 gamma-tubulin complex component 3 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 4
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 6
ghi04120 Ubiquitin mediated proteolysis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 6
ghi04120 Ubiquitin mediated proteolysis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 7
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04142 Lysosome 2
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00230 Purine metabolism 2
ppo00240 Pyrimidine metabolism 2
ppo00480 Glutathione metabolism 2
ppo01232 Nucleotide metabolism 2
ppo03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
mtr03018 RNA degradation 2
mtr00230 Purine metabolism 2
mtr00250 Alanine, aspartate and glutamate metabolism 2
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00510 N-Glycan biosynthesis 4
sbi04141 Protein processing in endoplasmic reticulum 4
sbi00513 Various types of N-glycan biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830557 103850631 103847006 106422800 106397277 107899394 107948575 102620528 100811956 100784710 100245188 7488037 7455634 11437941 101243735 102592969 107823784 107817410 4347202 100280166 123132195 123143729 123103918 123398410 123403059 8081016 100836813 5725025
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