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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   VPS20.2   vacuolar protein sorting-associated protein 20.2 
 ath-r.7   VPS20.2   vacuolar protein sorting-associated protein 20.2 
 ath-e.2   VPS20.2   vacuolar protein sorting-associated protein 20.2 
 ath-u.5   VPS20.1   SNF7 family protein 
 bra-r.6   103873806   vacuolar protein sorting-associated protein 20 homolog 1 
 bra-r.6   103847195   vacuolar protein sorting-associated protein 20 homolog 2 
 bna-r.1   111201531   vacuolar protein sorting-associated protein 20 homolog 2-like 
 bna-r.1   106348087   vacuolar protein sorting-associated protein 20 homolog 1 
 bna-r.1   106347944   vacuolar protein sorting-associated protein 20 homolog 1-like 
 ghi-r.1   107959626   vacuolar protein sorting-associated protein 20 homolog 1 
 ghi-r.1   107935807   vacuolar protein sorting-associated protein 20 homolog 1 
 cit-r.1   102607671   vacuolar protein sorting-associated protein 20 homolog 1-like 
 gma-u.5   100820408   vacuolar protein sorting-associated protein 20 homolog 2-like 
 gma-u.5   100775459   vacuolar protein sorting-associated protein 20 homolog 2 
 vvi-u.5   100248753   vacuolar protein sorting-associated protein 20 homolog 2 
 ppo-u.5   7466761   vacuolar protein sorting-associated protein 20 homolog 2 
 ppo-u.5   7466867   vacuolar protein sorting-associated protein 20 homolog 2 
 mtr-u.5   11420731   vacuolar protein sorting-associated protein 20 homolog 2 
 sly-u.5   101250100   vacuolar protein sorting-associated protein 20 homolog 2 
 sot-r.1   102602334   vacuolar protein sorting-associated protein 20 homolog 2-like 
 nta-r.1   107803456   vacuolar protein sorting-associated protein 20 homolog 2 
 nta-r.1   107793302   vacuolar protein sorting-associated protein 20 homolog 1 
 nta-r.1   107818109   vacuolar protein sorting-associated protein 20 homolog 1-like 
 osa-u.5   4329866   vacuolar protein sorting-associated protein 20 homolog 2 
 zma-u.5   100216677   Vacuolar protein sorting-associated protein 20 homolog 2 
 zma-u.5   100272755   uncharacterized LOC100272755 
 tae-r.2   123127599   vacuolar protein sorting-associated protein 20 homolog 2 
 tae-r.2   123137336   vacuolar protein sorting-associated protein 20 homolog 2 
 tae-r.2   123144702   vacuolar protein sorting-associated protein 20 homolog 2 
 hvu-r.1   123403165   vacuolar protein sorting-associated protein 20 homolog 2 
 hvu-r.1   123428605   vacuolar protein sorting-associated protein 20 homolog 2-like 
 sbi-r.1   8056480   vacuolar protein sorting-associated protein 20 homolog 2 
 bdi-r.1   100832170   vacuolar protein sorting-associated protein 20 homolog 2 
 cre-r.1   CHLRE_13g589700v5   uncharacterized protein 

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Top 50 coexpressed genes to VPS20.2 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to VPS20.2 (ath-u.5 coexpression data)

CoexMap"830785"


athVPS20.2 | Entrez gene ID : 830785      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 3 2 1 2 1 2 1 1 1 3 1 2 3 2 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03250 [list] [network] Viral life cycle - HIV-1 (39 genes)
ath04144 [list] [network] Endocytosis (156 genes)
GO BP
GO:0070676 [list] [network] intralumenal vesicle formation  (5 genes)  IDA  
GO:0016192 [list] [network] vesicle-mediated transport  (246 genes)  ISS  
GO CC
GO:0000815 [list] [network] ESCRT III complex  (9 genes)  ISS  
GO:0005770 [list] [network] late endosome  (43 genes)  IDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  IDA  
GO:0005886 [list] [network] plasma membrane  (2598 genes)  HDA IDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_196488.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  cyto_nucl 5,  nucl 2,  chlo 1  (predict for NP_196488.1)
Subcellular
localization
TargetP
other 8  (predict for NP_196488.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
VPS20.2
ath-r.7
for
VPS20.2
ath-e.2
for
VPS20.2
ath-u.5
for
VPS20.1
bra-r.6
for
103873806
bra-r.6
for
103847195
bna-r.1
for
111201531
bna-r.1
for
106348087
bna-r.1
for
106347944
ghi-r.1
for
107959626
ghi-r.1
for
107935807
cit-r.1
for
102607671
gma-u.5
for
100820408
gma-u.5
for
100775459
vvi-u.5
for
100248753
ppo-u.5
for
7466761
ppo-u.5
for
7466867
mtr-u.5
for
11420731
sly-u.5
for
101250100
sot-r.1
for
102602334
nta-r.1
for
107803456
nta-r.1
for
107793302
nta-r.1
for
107818109
osa-u.5
for
4329866
zma-u.5
for
100216677
zma-u.5
for
100272755
tae-r.2
for
123127599
tae-r.2
for
123137336
tae-r.2
for
123144702
hvu-r.1
for
123403165
hvu-r.1
for
123428605
sbi-r.1
for
8056480
bdi-r.1
for
100832170
cre-r.1
for
CHLRE_13g589700v5


Ortholog ID: 6072
Species ath ath bra bra bna bna bna ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta nta osa zma zma tae tae tae hvu hvu sbi bdi cre
Symbol VPS20.2 VPS20.1 LOC103873806 LOC103847195 LOC106348087 LOC106347944 LOC106418989 LOC107959626 LOC107935807 LOC102607671 LOC100820408 LOC100775459 LOC100248753 LOC7466761 LOC7466867 LOC11420731 LOC101250100 LOC102602334 LOC107803456 LOC107818109 LOC107758927 LOC4329866 LOC100216677 LOC100272755 LOC123127599 LOC123137336 LOC123144702 LOC123403165 LOC123428605 LOC8056480 LOC100832170 CHLRE_13g589700v5
Function* vacuolar protein sorting-associated protein 20.2 SNF7 family protein vacuolar protein sorting-associated protein 20 homolog 1 vacuolar protein sorting-associated protein 20 homolog 2 vacuolar protein sorting-associated protein 20 homolog 1 vacuolar protein sorting-associated protein 20 homolog 1-like vacuolar protein sorting-associated protein 20 homolog 2 vacuolar protein sorting-associated protein 20 homolog 1 vacuolar protein sorting-associated protein 20 homolog 1 vacuolar protein sorting-associated protein 20 homolog 1-like vacuolar protein sorting-associated protein 20 homolog 2-like vacuolar protein sorting-associated protein 20 homolog 2 vacuolar protein sorting-associated protein 20 homolog 2 vacuolar protein sorting-associated protein 20 homolog 2 vacuolar protein sorting-associated protein 20 homolog 2 vacuolar protein sorting-associated protein 20 homolog 2 vacuolar protein sorting-associated protein 20 homolog 2 vacuolar protein sorting-associated protein 20 homolog 2-like vacuolar protein sorting-associated protein 20 homolog 2 vacuolar protein sorting-associated protein 20 homolog 1-like vacuolar protein sorting-associated protein 20 homolog 1 vacuolar protein sorting-associated protein 20 homolog 2 Vacuolar protein sorting-associated protein 20 homolog 2 uncharacterized LOC100272755 vacuolar protein sorting-associated protein 20 homolog 2 vacuolar protein sorting-associated protein 20 homolog 2 vacuolar protein sorting-associated protein 20 homolog 2 vacuolar protein sorting-associated protein 20 homolog 2 vacuolar protein sorting-associated protein 20 homolog 2-like vacuolar protein sorting-associated protein 20 homolog 2 vacuolar protein sorting-associated protein 20 homolog 2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 4
ath04130 SNARE interactions in vesicular transport 3
ath03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 3
bra00280 Valine, leucine and isoleucine degradation 3
bra00640 Propanoate metabolism 2
bra01210 2-Oxocarboxylic acid metabolism 2
bra00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 4
bra04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04130 SNARE interactions in vesicular transport 2
bna04626 Plant-pathogen interaction 2
bna03250 Viral life cycle - HIV-1 2
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 2
bna04626 Plant-pathogen interaction 2
bna03250 Viral life cycle - HIV-1 2
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03250 Viral life cycle - HIV-1 2
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03250 Viral life cycle - HIV-1 2
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03250 Viral life cycle - HIV-1 2
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 4
gma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 3
gma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 7
ppo04145 Phagosome 6
ppo04148 Efferocytosis 5
ppo03050 Proteasome 3
ppo03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 4
ppo03272 Virion - Hepatitis viruses 2
ppo03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04136 Autophagy - other 2
mtr04144 Endocytosis 2
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 4
sly03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04626 Plant-pathogen interaction 2
sot04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 6
nta03250 Viral life cycle - HIV-1 4
nta04120 Ubiquitin mediated proteolysis 4
nta03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 6
nta03250 Viral life cycle - HIV-1 4
nta04120 Ubiquitin mediated proteolysis 4
nta03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 6
nta03250 Viral life cycle - HIV-1 4
nta04120 Ubiquitin mediated proteolysis 4
nta03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04136 Autophagy - other 4
osa04144 Endocytosis 3
osa03250 Viral life cycle - HIV-1 2
osa04120 Ubiquitin mediated proteolysis 2
osa04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 7
zma04130 SNARE interactions in vesicular transport 5
zma03250 Viral life cycle - HIV-1 3
zma04145 Phagosome 2
zma04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 4
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 3
tae03250 Viral life cycle - HIV-1 3
tae04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03250 Viral life cycle - HIV-1 3
tae04144 Endocytosis 3
tae00020 Citrate cycle (TCA cycle) 2
tae01200 Carbon metabolism 2
tae01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 5
tae03250 Viral life cycle - HIV-1 3
tae04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 4
sbi04136 Autophagy - other 2
sbi00600 Sphingolipid metabolism 2
sbi04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830785 836508 103873806 103847195 106348087 106347944 106418989 107959626 107935807 102607671 100820408 100775459 100248753 7466761 7466867 11420731 101250100 102602334 107803456 107818109 107758927 4329866 100216677 100272755 123127599 123137336 123144702 123403165 123428605 8056480 100832170 5725725
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