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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT5G12440   CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein 
 ath-r.7   AT5G12440   CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein 
 ath-m.9   AT5G12440   CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein 
 ath-e.2   AT5G12440   CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein 
 ath-m.4.bio   AT5G12440   CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein 
 ath-m.4.hor   AT5G12440   CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein 
 ath-m.4.lig   AT5G12440   CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein 
 ath-m.4.str   AT5G12440   CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein 
 ath-m.4.tis   AT5G12440   CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein 
 bra-r.6   103846638   zinc finger CCCH domain-containing protein 55 
 bra-r.6   103855979   zinc finger CCCH domain-containing protein 55-like 
 bna-r.1   106431899   zinc finger CCCH domain-containing protein 55 
 bna-r.1   106454636   zinc finger CCCH domain-containing protein 55 
 bna-r.1   106372369   zinc finger CCCH domain-containing protein 55 
 ghi-r.1   107891430   zinc finger CCCH domain-containing protein 55 
 ghi-r.1   107953064   zinc finger CCCH domain-containing protein 55 
 ghi-r.1   107889308   zinc finger CCCH domain-containing protein 55 
 cit-r.1   102616652   zinc finger CCCH domain-containing protein 55 
 gma-u.5   100778061   zinc finger CCCH domain-containing protein 55 
 gma-u.5   100818923   zinc finger CCCH domain-containing protein 55 
 ppo-u.5   7467382   zinc finger CCCH domain-containing protein 55 
 ppo-u.5   7467974   zinc finger CCCH domain-containing protein 55 
 mtr-u.5   11442586   zinc finger CCCH domain-containing protein 55 

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Top 50 coexpressed genes to AT5G12440 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G12440 (ath-u.5 coexpression data)

CoexMap"831119"


athAT5G12440 | Entrez gene ID : 831119      
Species ath bra bna ghi cit gma ppo mtr cre vvi nta hvu tae bdi osa zma sly sot sbi
Paralog 9 2 3 3 1 2 2 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001190296.1 [sequence] [blastp]
NP_001318550.1 [sequence] [blastp]
NP_001318551.1 [sequence] [blastp]
NP_001332061.1 [sequence] [blastp]
NP_001332062.1 [sequence] [blastp]
NP_001332063.1 [sequence] [blastp]
NP_001332064.1 [sequence] [blastp]
NP_001332065.1 [sequence] [blastp]
NP_001332066.1 [sequence] [blastp]
NP_001332067.1 [sequence] [blastp]
NP_001332068.1 [sequence] [blastp]
NP_568277.5 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto 1,  vacu 1  (predict for NP_001190296.1)
nucl 9,  cyto 1,  vacu 1  (predict for NP_001318550.1)
extr 4,  vacu 2,  E.R. 1,  chlo 1,  plas 1,  golg 1,  golg_plas 1,  cyto_E.R. 1  (predict for NP_001318551.1)
nucl 9,  cyto 1,  vacu 1  (predict for NP_001332061.1)
extr 4,  vacu 2,  E.R. 1,  chlo 1,  plas 1,  golg 1,  golg_plas 1,  cyto_E.R. 1  (predict for NP_001332062.1)
nucl 9,  cyto 1,  vacu 1  (predict for NP_001332063.1)
extr 4,  vacu 2,  E.R. 1,  chlo 1,  plas 1,  golg 1,  golg_plas 1,  cyto_E.R. 1  (predict for NP_001332064.1)
nucl 9,  cyto 1,  vacu 1  (predict for NP_001332065.1)
extr 4,  vacu 2,  E.R. 1,  chlo 1,  plas 1,  golg 1,  golg_plas 1,  cyto_E.R. 1  (predict for NP_001332066.1)
extr 4,  vacu 2,  E.R. 1,  chlo 1,  plas 1,  golg 1,  golg_plas 1,  cyto_E.R. 1  (predict for NP_001332067.1)
nucl 9,  cyto 1,  vacu 1  (predict for NP_001332068.1)
nucl 9,  cyto 1,  vacu 1  (predict for NP_568277.5)
Subcellular
localization
TargetP
other 9  (predict for NP_001190296.1)
other 9  (predict for NP_001318550.1)
scret 9  (predict for NP_001318551.1)
other 9  (predict for NP_001332061.1)
scret 9  (predict for NP_001332062.1)
other 9  (predict for NP_001332063.1)
scret 9  (predict for NP_001332064.1)
other 9  (predict for NP_001332065.1)
scret 9  (predict for NP_001332066.1)
scret 9  (predict for NP_001332067.1)
other 9  (predict for NP_001332068.1)
other 9  (predict for NP_568277.5)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT5G12440
ath-r.7
for
AT5G12440
ath-m.9
for
AT5G12440
ath-e.2
for
AT5G12440
ath-m.4.bio
for
AT5G12440
ath-m.4.hor
for
AT5G12440
ath-m.4.lig
for
AT5G12440
ath-m.4.str
for
AT5G12440
ath-m.4.tis
for
AT5G12440
bra-r.6
for
103846638
bra-r.6
for
103855979
bna-r.1
for
106431899
bna-r.1
for
106454636
bna-r.1
for
106372369
ghi-r.1
for
107891430
ghi-r.1
for
107953064
ghi-r.1
for
107889308
cit-r.1
for
102616652
gma-u.5
for
100778061
gma-u.5
for
100818923
ppo-u.5
for
7467382
ppo-u.5
for
7467974
mtr-u.5
for
11442586


Ortholog ID: 12924
Species ath bra bra bna bna bna ghi ghi ghi cit gma gma ppo ppo mtr
Symbol AT5G12440 LOC103846638 LOC103855979 LOC106431899 LOC106454636 LOC106372369 LOC107953064 LOC107889308 LOC107954299 LOC102616652 LOC100778061 LOC100818923 LOC7467382 LOC7467974 LOC11442586
Function* CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein zinc finger CCCH domain-containing protein 55 zinc finger CCCH domain-containing protein 55-like zinc finger CCCH domain-containing protein 55 zinc finger CCCH domain-containing protein 55 zinc finger CCCH domain-containing protein 55 zinc finger CCCH domain-containing protein 55 zinc finger CCCH domain-containing protein 55 zinc finger CCCH domain-containing protein 55 zinc finger CCCH domain-containing protein 55 zinc finger CCCH domain-containing protein 55 zinc finger CCCH domain-containing protein 55 zinc finger CCCH domain-containing protein 55 zinc finger CCCH domain-containing protein 55 zinc finger CCCH domain-containing protein 55
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04814 Motor proteins 2
bna03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 3
bna03420 Nucleotide excision repair 3
bna04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 3
gma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831119 103846638 103855979 106431899 106454636 106372369 107953064 107889308 107954299 102616652 100778061 100818923 7467382 7467974 11442586
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