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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   RAD4   DNA repair protein Rad4 family 
 ath-r.7   RAD4   DNA repair protein Rad4 family 
 ath-m.9   RAD4   DNA repair protein Rad4 family 
 ath-e.2   RAD4   DNA repair protein Rad4 family 
 ath-m.4.bio   RAD4   DNA repair protein Rad4 family 
 ath-m.4.hor   RAD4   DNA repair protein Rad4 family 
 ath-m.4.lig   RAD4   DNA repair protein Rad4 family 
 ath-m.4.str   RAD4   DNA repair protein Rad4 family 
 ath-m.4.tis   RAD4   DNA repair protein Rad4 family 
 bra-r.6   103851059   DNA repair protein RAD4 
 bna-r.1   106423638   DNA repair protein RAD4-like 
 bna-r.1   106354445   DNA repair protein RAD4 
 ghi-r.1   121219362   DNA repair protein RAD4 
 ghi-r.1   107936805   DNA repair protein RAD4 
 cit-r.1   102619998   DNA repair protein RAD4 
 gma-u.5   100818100   DNA repair protein RAD4 
 vvi-u.5   100265647   DNA repair protein RAD4 
 ppo-u.5   7487392   DNA repair protein RAD4 
 mtr-u.5   11436447   DNA repair protein RAD4 
 sly-u.5   101265989   DNA repair protein RAD4 
 sot-r.1   102584255   DNA repair protein RAD4 
 nta-r.1   107781198   DNA repair protein RAD4-like 
 nta-r.1   107817895   DNA repair protein RAD4 
 osa-u.5   4345619   DNA repair protein RAD4 
 zma-u.5   103645297   DNA repair protein RAD4 
 tae-r.2   123150189   DNA repair protein RAD4 
 tae-r.2   123165367   DNA repair protein RAD4 
 tae-r.2   123160887   DNA repair protein RAD4 
 hvu-r.1   123409758   DNA repair protein RAD4 
 sbi-r.1   8075387   DNA repair protein RAD4 
 bdi-r.1   100830028   DNA repair protein RAD4 
 cre-r.1   CHLRE_12g557400v5   uncharacterized protein 

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Top 50 coexpressed genes to RAD4 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RAD4 (ath-u.5 coexpression data)

CoexMap"831525"


athRAD4 | Entrez gene ID : 831525      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 1 1 1 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03420 [list] [network] Nucleotide excision repair (85 genes)
GO BP
GO:0009650 [list] [network] UV protection  (13 genes)  IMP  
GO:0006289 [list] [network] nucleotide-excision repair  (18 genes)  IMP  
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (43 genes)  IMP  
GO:0009411 [list] [network] response to UV  (141 genes)  IMP  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001031894.1 [sequence] [blastp]
NP_001332636.1 [sequence] [blastp]
NP_197166.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  chlo_mito 4,  nucl 1,  mito 1,  cyto_nucl 1,  cysk_nucl 1  (predict for NP_001031894.1)
chlo 6,  chlo_mito 4,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for NP_001332636.1)
chlo 6,  chlo_mito 4,  nucl 1,  mito 1,  cyto_nucl 1,  cysk_nucl 1  (predict for NP_197166.2)
Subcellular
localization
TargetP
chlo 4,  mito 3  (predict for NP_001031894.1)
chlo 4,  mito 3  (predict for NP_001332636.1)
chlo 4,  mito 3  (predict for NP_197166.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
RAD4
ath-r.7
for
RAD4
ath-m.9
for
RAD4
ath-e.2
for
RAD4
ath-m.4.bio
for
RAD4
ath-m.4.hor
for
RAD4
ath-m.4.lig
for
RAD4
ath-m.4.str
for
RAD4
ath-m.4.tis
for
RAD4
bra-r.6
for
103851059
bna-r.1
for
106423638
bna-r.1
for
106354445
ghi-r.1
for
121219362
ghi-r.1
for
107936805
cit-r.1
for
102619998
gma-u.5
for
100818100
vvi-u.5
for
100265647
ppo-u.5
for
7487392
mtr-u.5
for
11436447
sly-u.5
for
101265989
sot-r.1
for
102584255
nta-r.1
for
107781198
nta-r.1
for
107817895
osa-u.5
for
4345619
zma-u.5
for
103645297
tae-r.2
for
123150189
tae-r.2
for
123165367
tae-r.2
for
123160887
hvu-r.1
for
123409758
sbi-r.1
for
8075387
bdi-r.1
for
100830028
cre-r.1
for
CHLRE_12g557400v5


Ortholog ID: 10934
Species ath bra bna bna ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol RAD4 LOC103851059 LOC106423638 LOC106354445 LOC121219362 LOC107936805 LOC102619998 LOC100818100 LOC100265647 LOC7487392 LOC11436447 LOC101265989 LOC102584255 LOC107781198 LOC107817895 LOC4345619 LOC103645297 LOC123150189 LOC123165367 LOC123160887 LOC123409758 LOC8075387 LOC100830028 CHLRE_12g557400v5
Function* DNA repair protein Rad4 family DNA repair protein RAD4 DNA repair protein RAD4-like DNA repair protein RAD4 DNA repair protein RAD4 DNA repair protein RAD4 DNA repair protein RAD4 DNA repair protein RAD4 DNA repair protein RAD4 DNA repair protein RAD4 DNA repair protein RAD4 DNA repair protein RAD4 DNA repair protein RAD4 DNA repair protein RAD4-like DNA repair protein RAD4 DNA repair protein RAD4 DNA repair protein RAD4 DNA repair protein RAD4 DNA repair protein RAD4 DNA repair protein RAD4 DNA repair protein RAD4 DNA repair protein RAD4 DNA repair protein RAD4 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath00562 Inositol phosphate metabolism 2
ath04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00562 Inositol phosphate metabolism 2
bna04070 Phosphatidylinositol signaling system 2
bna04145 Phagosome 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00562 Inositol phosphate metabolism 2
bna04070 Phosphatidylinositol signaling system 2
bna04145 Phagosome 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 3
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03420 Nucleotide excision repair 2
nta03040 Spliceosome 2
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00900 Terpenoid backbone biosynthesis 2
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00906 Carotenoid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831525 103851059 106423638 106354445 121219362 107936805 102619998 100818100 100265647 7487392 11436447 101265989 102584255 107781198 107817895 4345619 103645297 123150189 123165367 123160887 123409758 8075387 100830028 66055851
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