Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   AT5G17200   Pectin lyase-like superfamily protein 
 ath-m.4.bio   AT5G17200   Pectin lyase-like superfamily protein 
 ath-m.4.hor   AT5G17200   Pectin lyase-like superfamily protein 
 ath-m.4.lig   AT5G17200   Pectin lyase-like superfamily protein 
 ath-m.4.str   AT5G17200   Pectin lyase-like superfamily protein 
 ath-m.4.tis   AT5G17200   Pectin lyase-like superfamily protein 
 mtr-u.5   11431564   probable polygalacturonase At1g80170 
 sly-u.5   PGcat   polygalacturonase 
 sly-u.5   101256371   probable polygalacturonase At3g15720 
 sot-r.1   102602941   probable polygalacturonase At3g15720 
 nta-r.1   107761023   putative polygalacturonase At3g15720 
 nta-r.1   107767548   putative polygalacturonase At3g15720 
 nta-r.1   107776714   putative polygalacturonase At3g15720 
 tae-r.2   123041778   polygalacturonase ADPG1-like 
 tae-r.2   123049740   polygalacturonase ADPG1-like 

close


Top 50 coexpressed genes to AT5G17200 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to AT5G17200 (ath-m.9 coexpression data)

CoexMap"831584"


athAT5G17200 | Entrez gene ID : 831584      
Species ath mtr sly sot nta tae zma ghi bdi vvi osa gma ppo bna cit sbi hvu cre bra
Paralog 6 1 2 1 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00040 [list] [network] Pentose and glucuronate interconversions (108 genes)
GO BP
GO:0005975 [list] [network] carbohydrate metabolic process  (601 genes)  IEA  
GO CC
GO:0005576 [list] [network] extracellular region  (3158 genes)  ISM  
GO MF
GO:0004650 [list] [network] polygalacturonase activity  (69 genes)  IEA  
Protein NP_197222.1 [sequence] [blastp]
Subcellular
localization
wolf
extr 5,  vacu 1,  chlo 1,  cyto 1,  mito 1,  plas 1,  E.R. 1,  chlo_mito 1,  E.R._plas 1,  mito_plas 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_197222.1)
Subcellular
localization
TargetP
scret 9  (predict for NP_197222.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
AT5G17200
ath-m.4.bio
for
AT5G17200
ath-m.4.hor
for
AT5G17200
ath-m.4.lig
for
AT5G17200
ath-m.4.str
for
AT5G17200
ath-m.4.tis
for
AT5G17200
mtr-u.5
for
11431564
sly-u.5
for
PGcat
sly-u.5
for
101256371
sot-r.1
for
102602941
nta-r.1
for
107761023
nta-r.1
for
107767548
nta-r.1
for
107776714
tae-r.2
for
123041778
tae-r.2
for
123049740


Ortholog ID: 2099
Species gma mtr sly sly sot nta nta nta tae
Symbol LOC100787465 LOC25495857 PGcat LOC101256371 LOC102602941 LOC107761023 LOC107776714 LOC107770857 LOC123049740
Function* probable polygalacturonase At1g80170 probable polygalacturonase At3g15720 polygalacturonase probable polygalacturonase At3g15720 probable polygalacturonase At3g15720 putative polygalacturonase At3g15720 putative polygalacturonase At3g15720 putative polygalacturonase At3g15720 polygalacturonase ADPG1-like
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00511 Other glycan degradation 2
sly04142 Lysosome 2
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00920 Sulfur metabolism 3
sly01320 Sulfur cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01212 Fatty acid metabolism 3
sot00061 Fatty acid biosynthesis 2
sot00780 Biotin metabolism 2
sot01240 Biosynthesis of cofactors 2
sot00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 3
nta04075 Plant hormone signal transduction 3
nta02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00040 Pentose and glucuronate interconversions 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100787465 25495857 543587 101256371 102602941 107761023 107776714 107770857 123049740
The preparation time of this page was 0.1 [sec].