ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	AT5G44390	FAD-binding Berberine family protein
ath-r.7	AT5G44390	FAD-binding Berberine family protein
ath-m.9	AT5G44390	FAD-binding Berberine family protein
ath-e.2	AT5G44390	FAD-binding Berberine family protein
ath-m.4.bio	AT5G44390	FAD-binding Berberine family protein
ath-m.4.hor	AT5G44390	FAD-binding Berberine family protein
ath-m.4.lig	AT5G44390	FAD-binding Berberine family protein
ath-m.4.str	AT5G44390	FAD-binding Berberine family protein
ath-m.4.tis	AT5G44390	FAD-binding Berberine family protein
ath-u.5	AT1G26380	FAD-binding Berberine family protein
ath-u.5	AT1G26390	FAD-binding Berberine family protein
bna-r.1	106407225	berberine bridge enzyme-like 12
bna-r.1	106407151	berberine bridge enzyme-like 13
bna-r.1	106402215	berberine bridge enzyme-like 7
ghi-r.1	107925100	berberine bridge enzyme-like 7
ghi-r.1	107925239	berberine bridge enzyme-like 8
cit-r.1	102613827	tetrahydroberberine oxidase-like
cit-r.1	102613244	tetrahydroberberine oxidase-like
cit-r.1	102612334	tetrahydroberberine oxidase-like
gma-u.5	100807998	berberine bridge enzyme-like 17
gma-u.5	100775353	berberine bridge enzyme-like 13
gma-u.5	100775893	berberine bridge enzyme-like 21
vvi-u.5	100253961	tetrahydroberberine oxidase
vvi-u.5	100248870	tetrahydroberberine oxidase
vvi-u.5	100246147	berberine bridge enzyme-like 21
ppo-u.5	7480409	berberine bridge enzyme-like 15
ppo-u.5	112324786	berberine bridge enzyme-like 8
mtr-u.5	11416804	berberine bridge enzyme-like 13
sly-u.5	101246398	berberine bridge enzyme-like 22
sly-u.5	101263972	tetrahydroberberine oxidase-like
sot-r.1	102594583	tetrahydrocannabinolic acid synthase-like
sot-r.1	102594246	tetrahydrocannabinolic acid synthase-like
sot-r.1	102594245	reticuline oxidase-like protein
nta-r.1	107766044	berberine bridge enzyme-like 22
nta-r.1	107766440	berberine bridge enzyme-like 21
osa-u.5	9271032	berberine bridge enzyme-like Cyn d 4
zma-u.5	103638604	berberine bridge enzyme-like 18
zma-u.5	113839551	uncharacterized LOC113839551
tae-r.2	123161252	berberine bridge enzyme-like Cyn d 4
tae-r.2	123042628	berberine bridge enzyme-like Cyn d 4
hvu-r.1	123411501	berberine bridge enzyme-like Cyn d 4
hvu-r.1	123413019	berberine bridge enzyme-like Cyn d 4
sbi-r.1	8073826	berberine bridge enzyme-like 13
bdi-r.1	100833798	berberine bridge enzyme-like 28
bdi-r.1	100826011	berberine bridge enzyme-like 27
cre-r.1	CHLRE_09g397253v5	uncharacterized protein

Top 50 coexpressed genes to AT5G44390 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT5G44390 (ath-u.5 coexpression data)

CoexMap"834465"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0009505 [list] [network] plant-type cell wall	(504 genes)	ISS
GO:0009507 [list] [network] chloroplast	(5014 genes)	ISM

GO MF

GO:0071949 [list] [network] FAD binding

(44 genes)

IEA

Protein

NP_199252.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 5, extr 1, vacu 1, E.R. 1, E.R._vacu 1

(predict for NP_199252.1)

Subcellular
localization
TargetP

scret 8

(predict for NP_199252.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT5G44390	ath-r.7 for AT5G44390	ath-m.9 for AT5G44390	ath-e.2 for AT5G44390	ath-m.4.bio for AT5G44390	ath-m.4.hor for AT5G44390	ath-m.4.lig for AT5G44390	ath-m.4.str for AT5G44390	ath-m.4.tis for AT5G44390	ath-u.5 for AT1G26380	ath-u.5 for AT1G26390	bna-r.1 for 106407225	bna-r.1 for 106407151	bna-r.1 for 106402215	ghi-r.1 for 107925100	ghi-r.1 for 107925239	cit-r.1 for 102613827	cit-r.1 for 102613244	cit-r.1 for 102612334	gma-u.5 for 100807998	gma-u.5 for 100775353	gma-u.5 for 100775893	vvi-u.5 for 100253961	vvi-u.5 for 100248870	vvi-u.5 for 100246147	ppo-u.5 for 7480409	ppo-u.5 for 112324786	mtr-u.5 for 11416804	sly-u.5 for 101246398	sly-u.5 for 101263972	sot-r.1 for 102594583	sot-r.1 for 102594246	sot-r.1 for 102594245	nta-r.1 for 107766044	nta-r.1 for 107766440	osa-u.5 for 9271032	zma-u.5 for 103638604	zma-u.5 for 113839551	tae-r.2 for 123161252	tae-r.2 for 123042628	hvu-r.1 for 123411501	hvu-r.1 for 123413019	sbi-r.1 for 8073826	bdi-r.1 for 100833798	bdi-r.1 for 100826011	cre-r.1 for CHLRE_09g397253v5

Ortholog

Ortholog ID: 8

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

FAD-binding Berberine family protein

berberine bridge enzyme-like 15

berberine bridge enzyme-like 1

berberine bridge enzyme-like 15

berberine bridge enzyme-like 22

berberine bridge enzyme-like 13

berberine bridge enzyme-like 18

berberine bridge enzyme-like 7

berberine bridge enzyme-like 26

tetrahydroberberine oxidase-like

berberine bridge enzyme-like 13

berberine bridge enzyme-like 21

tetrahydroberberine oxidase

berberine bridge enzyme-like 21

berberine bridge enzyme-like 13

berberine bridge enzyme-like 21

berberine bridge enzyme-like 22

berberine bridge enzyme-like 21

berberine bridge enzyme-like 28

tetrahydroberberine oxidase-like

monolignol oxidoreductase AtBBE-like 13

tetrahydrocannabinolic acid synthase-like

reticuline oxidase-like protein

tetrahydroberberine oxidase

berberine bridge enzyme-like 22

berberine bridge enzyme-like Cyn d 4

berberine bridge enzyme-like 27

berberine bridge enzyme-like Cyn d 4

berberine bridge enzyme-like 13

berberine bridge enzyme-like 18

berberine bridge enzyme-like 28

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00480	Glutathione metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00040	Pentose and glucuronate interconversions	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00940	Phenylpropanoid biosynthesis	2
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00940	Phenylpropanoid biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00350	Tyrosine metabolism	2
ghi00950	Isoquinoline alkaloid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00052	Galactose metabolism	2
ghi00561	Glycerolipid metabolism	2
ghi00600	Sphingolipid metabolism	2
ghi00603	Glycosphingolipid biosynthesis - globo and isoglobo series	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04142	Lysosome	4
vvi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00940	Phenylpropanoid biosynthesis	4
ppo04016	MAPK signaling pathway - plant	2
ppo04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00906	Carotenoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00010	Glycolysis / Gluconeogenesis	4
osa01200	Carbon metabolism	3
osa01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00902	Monoterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00010	Glycolysis / Gluconeogenesis	4
sbi00052	Galactose metabolism	4
sbi00260	Glycine, serine and threonine metabolism	2
sbi00310	Lysine degradation	2
sbi04146	Peroxisome	2

Expression

Expression pattern

Entrez Gene ID^*

839180

839181

103865354

103850258

103867418

106375689

125576459

107914760

107925005

107930381

102623495

100800519

100797188

100253961

100243731

100264985

18109453

11407647

11422989

112421407

101254965

101263376

101256448

102594583

102586155

107763225

107807516

107807513

4341254

4341253

103629835

103629842

123160322

123413019

123411227

123409696

8073826

110430759

100833798

66054712

The preparation time of this page was 0.2 [sec].


Species	ath	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre	bra
Paralog	11	3	2	3	3	3	2	1	2	3	2	1	2	2	2	1	2	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT5G44390 (ath-u.5 coexpression data)

Top 50 enrichment test to AT5G44390 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**