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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT5G52545   RNA-binding protein-like RNA recognition motif protein 
 ath-r.7   AT5G52545   RNA-binding protein-like RNA recognition motif protein 
 ath-e.2   AT5G52545   RNA-binding protein-like RNA recognition motif protein 
 gma-u.5   100806572   probable RNA-binding protein 18 
 vvi-u.5   100259304   uncharacterized LOC100259304 
 ppo-u.5   7493594   uncharacterized LOC7493594 
 mtr-u.5   25496421   probable RNA-binding protein 18 
 mtr-u.5   25479712   probable RNA-binding protein 18 
 osa-u.5   4349230   uncharacterized LOC4349230 
 zma-u.5   100285538   ATP binding protein 

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Top 50 coexpressed genes to AT5G52545 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G52545 (ath-u.5 coexpression data)

CoexMap"835331"


athAT5G52545 | Entrez gene ID : 835331      
Species ath gma vvi ppo mtr osa zma bdi hvu bra cit bna sbi sly ghi sot nta cre tae
Paralog 3 1 1 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0003723 [list] [network] RNA binding  (1764 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (3104 genes)  IEA  
Protein NP_001332099.1 [sequence] [blastp]
NP_680425.4 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 2,  cysk_nucl 2,  chlo 1,  mito 1,  chlo_mito 1  (predict for NP_001332099.1)
nucl 6,  chlo 2,  cyto 1,  mito 1,  plas 1,  mito_plas 1,  cyto_plas 1  (predict for NP_680425.4)
Subcellular
localization
TargetP
other 9  (predict for NP_001332099.1)
mito 7  (predict for NP_680425.4)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT5G52545
ath-r.7
for
AT5G52545
ath-e.2
for
AT5G52545
gma-u.5
for
100806572
vvi-u.5
for
100259304
ppo-u.5
for
7493594
mtr-u.5
for
25496421
mtr-u.5
for
25479712
osa-u.5
for
4349230
zma-u.5
for
100285538


Ortholog ID: 10993
Species ath bra bna bna ghi ghi cit gma vvi ppo mtr mtr nta nta osa zma tae tae hvu sbi bdi bdi
Symbol AT5G52545 LOC103852092 LOC106418154 LOC106419178 LOC107904598 LOC107904602 LOC102607794 LOC100806572 LOC100259304 LOC7493594 LOC25479712 LOC25496421 LOC107804327 LOC107807160 LOC4349230 LOC100285538 LOC123168346 LOC123124649 LOC123410828 LOC110434298 LOC100821956 LOC100821728
Function* RNA-binding protein-like RNA recognition motif protein probable RNA-binding protein 18 probable RNA-binding protein 18 probable RNA-binding protein 18 probable RNA-binding protein 18 probable RNA-binding protein 18 uncharacterized LOC102607794 probable RNA-binding protein 18 uncharacterized LOC100259304 uncharacterized LOC7493594 probable RNA-binding protein 18 probable RNA-binding protein 18 uncharacterized LOC107804327 uncharacterized LOC107807160 uncharacterized LOC4349230 ATP binding protein probable RNA-binding protein 18 probable RNA-binding protein 18 probable RNA-binding protein 18 probable RNA-binding protein 18 probable RNA-binding protein 18 probable RNA-binding protein 18
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00540 Lipopolysaccharide biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
gma00510 N-Glycan biosynthesis 2
gma00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 6
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
nta03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04130 SNARE interactions in vesicular transport 4
zma04144 Endocytosis 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
tae04130 SNARE interactions in vesicular transport 3
tae00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 3
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
tae03015 mRNA surveillance pathway 3
tae04130 SNARE interactions in vesicular transport 3
tae00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 2
bdi03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835331 103852092 106418154 106419178 107904598 107904602 102607794 100806572 100259304 7493594 25479712 25496421 107804327 107807160 4349230 100285538 123168346 123124649 123410828 110434298 100821956 100821728
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