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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT5G53360   TRAF-like superfamily protein 
 ath-r.7   AT5G53360   TRAF-like superfamily protein 
 ath-m.9   AT5G53360   TRAF-like superfamily protein 
 ath-e.2   AT5G53360   TRAF-like superfamily protein 
 ath-m.4.bio   AT5G53360   TRAF-like superfamily protein 
 ath-m.4.hor   AT5G53360   TRAF-like superfamily protein 
 ath-m.4.lig   AT5G53360   TRAF-like superfamily protein 
 ath-m.4.str   AT5G53360   TRAF-like superfamily protein 
 ath-m.4.tis   AT5G53360   TRAF-like superfamily protein 
 ath-u.5   AT2G41980   Protein with RING/U-box and TRAF-like domain 
 ath-u.5   SINAT2   uncharacterized protein 
 ath-u.5   AT3G61790   Protein with RING/U-box and TRAF-like domain 
 gma-u.5   100813966   E3 ubiquitin-protein ligase SINAT2-like 
 gma-u.5   100782764   E3 ubiquitin-protein ligase SINAT3 
 gma-u.5   100792687   E3 ubiquitin-protein ligase SINAT3 
 vvi-u.5   100252009   E3 ubiquitin-protein ligase SINAT5 
 vvi-u.5   100267231   E3 ubiquitin-protein ligase SINAT2 
 vvi-u.5   100244678   E3 ubiquitin-protein ligase DIS1 
 ppo-u.5   7455750   E3 ubiquitin-protein ligase SINAT2 
 ppo-u.5   7496400   E3 ubiquitin-protein ligase SINAT4 
 mtr-u.5   11444084   E3 ubiquitin-protein ligase DIS1 
 mtr-u.5   11418493   E3 ubiquitin-protein ligase SINAT2 
 mtr-u.5   11418807   E3 ubiquitin-protein ligase DIS1 
 sly-u.5   101246723   E3 ubiquitin ligase SINA3 
 sly-u.5   SlSINA5   E3 ubiquitin ligase SINA5 
 sly-u.5   SINA4   E3 ubiquitin ligase SINA4 
 osa-u.5   4338181   E3 ubiquitin-protein ligase SINAT3 
 osa-u.5   4344172   E3 ubiquitin-protein ligase DIS1-like 
 osa-u.5   4329066   E3 ubiquitin-protein ligase SINAT5 
 zma-u.5   100192741   putative seven in absentia domain family protein 
 zma-u.5   100170243   uncharacterized LOC100170243 
 zma-u.5   100170242   uncharacterized LOC100170242 

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Top 50 coexpressed genes to AT5G53360 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G53360 (ath-u.5 coexpression data)

CoexMap"835417"


athAT5G53360 | Entrez gene ID : 835417      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 12 3 3 2 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04120 [list] [network] Ubiquitin mediated proteolysis (162 genes)
GO BP
GO:0016567 [list] [network] protein ubiquitination  (170 genes)  IDA  
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (219 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001330825.1 [sequence] [blastp]
NP_001330826.1 [sequence] [blastp]
NP_200148.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 3,  nucl 1,  plas 1,  vacu 1,  cysk 1,  cysk_nucl 1,  nucl_plas 1,  cysk_plas 1  (predict for NP_001330825.1)
nucl 4,  cyto 2,  extr 2,  nucl_plas 2  (predict for NP_001330826.1)
cyto 4,  chlo 3,  nucl 1,  plas 1,  vacu 1,  cysk 1,  cysk_nucl 1,  nucl_plas 1,  cysk_plas 1  (predict for NP_200148.2)
Subcellular
localization
TargetP
scret 5,  other 4  (predict for NP_001330825.1)
other 9  (predict for NP_001330826.1)
scret 5,  other 4  (predict for NP_200148.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT5G53360
ath-r.7
for
AT5G53360
ath-m.9
for
AT5G53360
ath-e.2
for
AT5G53360
ath-m.4.bio
for
AT5G53360
ath-m.4.hor
for
AT5G53360
ath-m.4.lig
for
AT5G53360
ath-m.4.str
for
AT5G53360
ath-m.4.tis
for
AT5G53360
ath-u.5
for
AT2G41980
ath-u.5
for
SINAT2
ath-u.5
for
AT3G61790
gma-u.5
for
100813966
gma-u.5
for
100782764
gma-u.5
for
100792687
vvi-u.5
for
100252009
vvi-u.5
for
100267231
vvi-u.5
for
100244678
ppo-u.5
for
7455750
ppo-u.5
for
7496400
mtr-u.5
for
11444084
mtr-u.5
for
11418493
mtr-u.5
for
11418807
sly-u.5
for
101246723
sly-u.5
for
SlSINA5
sly-u.5
for
SINA4
osa-u.5
for
4338181
osa-u.5
for
4344172
osa-u.5
for
4329066
zma-u.5
for
100192741
zma-u.5
for
100170243
zma-u.5
for
100170242


Ortholog ID: 342
Species ath ath bra bra bna bna ghi ghi cit cit gma gma vvi vvi ppo mtr mtr sly sly sot sot nta nta osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi
Symbol AT3G61790 AT5G53360 LOC103862812 LOC103867677 LOC106428173 LOC111215125 LOC107916308 LOC107940377 LOC102619672 LOC102623798 LOC100810573 LOC100500061 LOC100252009 LOC100233084 LOC7455750 LOC25500674 LOC25483549 LOC101246723 LOC101264159 LOC102599941 LOC102602506 LOC107794971 LOC107784733 LOC4338181 LOC4327774 LOC100170241 LOC100170242 LOC123077898 LOC123165457 LOC123428647 LOC123443282 LOC8080816 LOC8058290 LOC100833057 LOC100832893
Function* Protein with RING/U-box and TRAF-like domain TRAF-like superfamily protein E3 ubiquitin-protein ligase SINAT3 E3 ubiquitin-protein ligase SINAT4 putative E3 ubiquitin-protein ligase SINAT1 putative E3 ubiquitin-protein ligase SINAT1 E3 ubiquitin-protein ligase SINAT2 E3 ubiquitin-protein ligase DIS1 E3 ubiquitin-protein ligase SINAT2 E3 ubiquitin-protein ligase SINAT3 E3 ubiquitin-protein ligase SINAT3-like E3 ubiquitin-protein ligase SINAT2 E3 ubiquitin-protein ligase SINAT5 SINA1p E3 ubiquitin-protein ligase SINAT2 E3 ubiquitin-protein ligase SINAT3 E3 ubiquitin-protein ligase SINAT2 E3 ubiquitin ligase SINA3 E3 ubiquitin ligase SINA6 E3 ubiquitin-protein ligase SINAT5-like E3 ubiquitin-protein ligase SINAT3-like E3 ubiquitin-protein ligase SINAT3 E3 ubiquitin-protein ligase SINAT5 E3 ubiquitin-protein ligase SINAT3 E3 ubiquitin-protein ligase SINAT5 uncharacterized LOC100170241 uncharacterized LOC100170242 E3 ubiquitin-protein ligase SINAT5 E3 ubiquitin-protein ligase SINAT5 E3 ubiquitin-protein ligase SINAT5-like E3 ubiquitin-protein ligase SINAT5-like E3 ubiquitin-protein ligase SINAT3 E3 ubiquitin-protein ligase SINAT5 E3 ubiquitin-protein ligase SINAT5 E3 ubiquitin-protein ligase DIS1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 3
bna00220 Arginine biosynthesis 2
bna00230 Purine metabolism 2
bna03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 3
bna00280 Valine, leucine and isoleucine degradation 2
bna00640 Propanoate metabolism 2
bna00785 Lipoic acid metabolism 2
bna01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00770 Pantothenate and CoA biosynthesis 2
gma01240 Biosynthesis of cofactors 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00190 Oxidative phosphorylation 2
vvi04142 Lysosome 2
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 5
mtr03083 Polycomb repressive complex 2
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 2
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 2
sly04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 3
sly04145 Phagosome 2
sly04517 IgSF CAM signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00920 Sulfur metabolism 4
sot01320 Sulfur cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 4
nta00061 Fatty acid biosynthesis 2
nta00280 Valine, leucine and isoleucine degradation 2
nta01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 4
nta04075 Plant hormone signal transduction 2
nta04120 Ubiquitin mediated proteolysis 2
nta00310 Lysine degradation 2
nta00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
osa03015 mRNA surveillance pathway 2
osa04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04130 SNARE interactions in vesicular transport 3
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
bdi04814 Motor proteins 2
bdi03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 825352 835417 103862812 103867677 106428173 111215125 107916308 107940377 102619672 102623798 100810573 100500061 100252009 100233084 7455750 25500674 25483549 101246723 101264159 102599941 102602506 107794971 107784733 4338181 4327774 100170241 100170242 123077898 123165457 123428647 123443282 8080816 8058290 100833057 100832893
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