ATTED-II : GeneCoexpression result

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	PMEPCRF	pectin methylesterase PCR fragment F
ath-r.7	PMEPCRF	pectin methylesterase PCR fragment F
ath-m.9	PMEPCRF	pectin methylesterase PCR fragment F
ath-e.2	PMEPCRF	pectin methylesterase PCR fragment F
ath-m.4.bio	PMEPCRF	pectin methylesterase PCR fragment F
ath-m.4.hor	PMEPCRF	pectin methylesterase PCR fragment F
ath-m.4.lig	PMEPCRF	pectin methylesterase PCR fragment F
ath-m.4.str	PMEPCRF	pectin methylesterase PCR fragment F
ath-m.4.tis	PMEPCRF	pectin methylesterase PCR fragment F
ath-u.5	AT3G49220	Plant invertase/pectin methylesterase inhibitor superfamily
bra-r.6	103873499	probable pectinesterase/pectinesterase inhibitor 34
bra-r.6	103873080	probable pectinesterase/pectinesterase inhibitor 34
bra-r.6	103852037	probable pectinesterase/pectinesterase inhibitor 61
bna-r.1	106357682	probable pectinesterase/pectinesterase inhibitor 34
bna-r.1	106347430	probable pectinesterase/pectinesterase inhibitor 34
bna-r.1	106452313	probable pectinesterase/pectinesterase inhibitor 34
ghi-r.1	107924268	probable pectinesterase/pectinesterase inhibitor 34
ghi-r.1	107944787	probable pectinesterase/pectinesterase inhibitor 34
ghi-r.1	107937624	probable pectinesterase/pectinesterase inhibitor 34
cit-r.1	102624576	probable pectinesterase/pectinesterase inhibitor 61
gma-u.5	100808236	probable pectinesterase/pectinesterase inhibitor 61
gma-u.5	100776752	probable pectinesterase/pectinesterase inhibitor 34
gma-u.5	106796002	probable pectinesterase/pectinesterase inhibitor 61
vvi-u.5	100258861	probable pectinesterase/pectinesterase inhibitor 34
ppo-u.5	7496396	probable pectinesterase/pectinesterase inhibitor 34
ppo-u.5	7475195	probable pectinesterase/pectinesterase inhibitor 34
mtr-u.5	11441469	probable pectinesterase/pectinesterase inhibitor 34
mtr-u.5	11432815	probable pectinesterase/pectinesterase inhibitor 61
sly-u.5	101258375	probable pectinesterase/pectinesterase inhibitor 34
sly-u.5	101255775	pectin methylesterase
sot-r.1	102606318	probable pectinesterase/pectinesterase inhibitor 61
sot-r.1	102598997	probable pectinesterase/pectinesterase inhibitor 34
nta-r.1	107815257	putative pectinesterase/pectinesterase inhibitor 34
nta-r.1	107826812	putative pectinesterase/pectinesterase inhibitor 61
nta-r.1	107808989	putative pectinesterase/pectinesterase inhibitor 61
osa-u.5	9270906	probable pectinesterase/pectinesterase inhibitor 34
zma-u.5	100285544	pectinesterase-2

Annotation

functional annotation

KEGG

GO BP

GO:0042545 [list] [network] cell wall modification

(164 genes)

IEA

GO CC

GO:0005576 [list] [network] extracellular region	(3158 genes)	ISM
GO:0005634 [list] [network] nucleus	(10367 genes)	ISM

GO MF

GO:0030599 [list] [network] pectinesterase activity

(17 genes)

ISS

Protein

NP_001332265.1 [sequence] [blastp]
NP_200149.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 5, chlo_mito 3, cyto 2, nucl 1, plas 1, vacu 1, nucl_plas 1	(predict for NP_001332265.1)
nucl 3, cyto 3, cyto_nucl 3, chlo 1, vacu 1, E.R. 1, cysk_nucl 1, nucl_plas 1, E.R._vacu 1, cyto_pero 1, cyto_plas 1	(predict for NP_200149.1)

Subcellular
localization
TargetP

other 3	(predict for NP_001332265.1)
other 9	(predict for NP_200149.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for PMEPCRF	ath-r.7 for PMEPCRF	ath-m.9 for PMEPCRF	ath-e.2 for PMEPCRF	ath-m.4.bio for PMEPCRF	ath-m.4.hor for PMEPCRF	ath-m.4.lig for PMEPCRF	ath-m.4.str for PMEPCRF	ath-m.4.tis for PMEPCRF	ath-u.5 for AT3G49220	bra-r.6 for 103873499	bra-r.6 for 103873080	bra-r.6 for 103852037	bna-r.1 for 106357682	bna-r.1 for 106347430	bna-r.1 for 106452313	ghi-r.1 for 107924268	ghi-r.1 for 107944787	ghi-r.1 for 107937624	cit-r.1 for 102624576	gma-u.5 for 100808236	gma-u.5 for 100776752	gma-u.5 for 106796002	vvi-u.5 for 100258861	ppo-u.5 for 7496396	ppo-u.5 for 7475195	mtr-u.5 for 11441469	mtr-u.5 for 11432815	sly-u.5 for 101258375	sly-u.5 for 101255775	sot-r.1 for 102606318	sot-r.1 for 102598997	nta-r.1 for 107815257	nta-r.1 for 107826812	nta-r.1 for 107808989	osa-u.5 for 9270906	zma-u.5 for 100285544

Ortholog

Ortholog ID: 4093

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

Symbol

PMEPCRF

Function^*

pectin methylesterase PCR fragment F

Plant invertase/pectin methylesterase inhibitor superfamily