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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   MRE11   DNA repair and meiosis protein (Mre11) 
 ath-r.7   MRE11   DNA repair and meiosis protein (Mre11) 
 ath-m.9   MRE11   DNA repair and meiosis protein (Mre11) 
 ath-e.2   MRE11   DNA repair and meiosis protein (Mre11) 
 ath-m.4.bio   MRE11   DNA repair and meiosis protein (Mre11) 
 ath-m.4.hor   MRE11   DNA repair and meiosis protein (Mre11) 
 ath-m.4.lig   MRE11   DNA repair and meiosis protein (Mre11) 
 ath-m.4.str   MRE11   DNA repair and meiosis protein (Mre11) 
 ath-m.4.tis   MRE11   DNA repair and meiosis protein (Mre11) 
 bra-r.6   103844885   double-strand break repair protein MRE11 
 bna-r.1   106434510   double-strand break repair protein MRE11 
 bna-r.1   111212774   double-strand break repair protein MRE11 
 ghi-r.1   107947920   double-strand break repair protein MRE11 
 ghi-r.1   107903527   double-strand break repair protein MRE11 
 cit-r.1   102624634   double-strand break repair protein MRE11 
 gma-u.5   100801335   double-strand break repair protein MRE11 
 vvi-u.5   100252167   Mre11 DNA repair/recombination protein 
 ppo-u.5   18095655   double-strand break repair protein MRE11 
 mtr-u.5   11436847   double-strand break repair protein MRE11 
 sly-u.5   101264663   double-strand break repair protein MRE11 
 sot-r.1   107059491   uncharacterized LOC107059491 
 sot-r.1   102587218   double-strand break repair protein MRE11 
 nta-r.1   107790515   double-strand break repair protein MRE11 
 nta-r.1   107763165   double-strand break repair protein MRE11 
 osa-u.5   4337137   double-strand break repair protein MRE11-like 
 zma-u.5   100285133   double-strand break repair protein MRE11 
 tae-r.2   123190879   double-strand break repair protein MRE11 
 tae-r.2   123055023   double-strand break repair protein MRE11 
 hvu-r.1   123428238   double-strand break repair protein MRE11 
 sbi-r.1   8079542   double-strand break repair protein MRE11 
 bdi-r.1   100839664   double-strand break repair protein MRE11 
 cre-r.1   CHLRE_12g556911v5   uncharacterized protein 

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Top 50 coexpressed genes to MRE11 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to MRE11 (ath-u.5 coexpression data)

CoexMap"835514"


athMRE11 | Entrez gene ID : 835514      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 1 1 1 1 1 2 2 1 1 2 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03440 [list] [network] Homologous recombination (60 genes)
ath03450 [list] [network] Non-homologous end-joining (8 genes)
GO BP
GO CC
GO:0000795 [list] [network] synaptonemal complex  (7 genes)  IDA  
GO:0000791 [list] [network] euchromatin  (13 genes)  IDA  
GO:0000785 [list] [network] chromatin  (140 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0008296 [list] [network] 3'-5'-DNA exonuclease activity  (3 genes)  IEA  
GO:0004520 [list] [network] DNA endonuclease activity  (26 genes)  IEA  
GO:0030145 [list] [network] manganese ion binding  (42 genes)  IEA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001330550.1 [sequence] [blastp]
NP_200237.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  chlo 1,  cyto 1,  cysk 1  (predict for NP_001330550.1)
nucl 9,  chlo 1,  cyto 1  (predict for NP_200237.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001330550.1)
other 9  (predict for NP_200237.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
MRE11
ath-r.7
for
MRE11
ath-m.9
for
MRE11
ath-e.2
for
MRE11
ath-m.4.bio
for
MRE11
ath-m.4.hor
for
MRE11
ath-m.4.lig
for
MRE11
ath-m.4.str
for
MRE11
ath-m.4.tis
for
MRE11
bra-r.6
for
103844885
bna-r.1
for
106434510
bna-r.1
for
111212774
ghi-r.1
for
107947920
ghi-r.1
for
107903527
cit-r.1
for
102624634
gma-u.5
for
100801335
vvi-u.5
for
100252167
ppo-u.5
for
18095655
mtr-u.5
for
11436847
sly-u.5
for
101264663
sot-r.1
for
107059491
sot-r.1
for
102587218
nta-r.1
for
107790515
nta-r.1
for
107763165
osa-u.5
for
4337137
zma-u.5
for
100285133
tae-r.2
for
123190879
tae-r.2
for
123055023
hvu-r.1
for
123428238
sbi-r.1
for
8079542
bdi-r.1
for
100839664
cre-r.1
for
CHLRE_12g556911v5


Ortholog ID: 8199
Species ath bra bna bna ghi ghi cit gma vvi ppo mtr sly sot sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol MRE11 LOC103844885 LOC106434510 LOC111212774 LOC107947920 LOC107903527 LOC102624634 LOC100801335 LOC100252167 LOC18095655 LOC11436847 LOC101264663 LOC107059491 LOC102587218 LOC107790515 LOC107763165 LOC4337137 LOC100285133 LOC123190879 LOC123055023 LOC123047225 LOC123428238 LOC8079542 LOC100839664 CHLRE_12g556911v5
Function* DNA repair and meiosis protein (Mre11) double-strand break repair protein MRE11 double-strand break repair protein MRE11 double-strand break repair protein MRE11 double-strand break repair protein MRE11 double-strand break repair protein MRE11 double-strand break repair protein MRE11 double-strand break repair protein MRE11 Mre11 DNA repair/recombination protein double-strand break repair protein MRE11 double-strand break repair protein MRE11 double-strand break repair protein MRE11 uncharacterized LOC107059491 double-strand break repair protein MRE11 double-strand break repair protein MRE11 double-strand break repair protein MRE11 double-strand break repair protein MRE11-like double-strand break repair protein MRE11 double-strand break repair protein MRE11 double-strand break repair protein MRE11 double-strand break repair protein MRE11 double-strand break repair protein MRE11 double-strand break repair protein MRE11 double-strand break repair protein MRE11 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03450 Non-homologous end-joining 4
bna04016 MAPK signaling pathway - plant 2
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03450 Non-homologous end-joining 4
bna04016 MAPK signaling pathway - plant 2
bna03440 Homologous recombination 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
ghi03450 Non-homologous end-joining 2
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 5
ghi03008 Ribosome biogenesis in eukaryotes 3
ghi03250 Viral life cycle - HIV-1 3
ghi03440 Homologous recombination 2
ghi03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00514 Other types of O-glycan biosynthesis 2
gma03083 Polycomb repressive complex 2
gma03440 Homologous recombination 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03440 Homologous recombination 2
vvi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 8
ppo03440 Homologous recombination 2
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03440 Homologous recombination 2
sot03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03420 Nucleotide excision repair 2
sot03440 Homologous recombination 2
sot03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
nta03440 Homologous recombination 2
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae03020 RNA polymerase 4
tae04120 Ubiquitin mediated proteolysis 3
tae03440 Homologous recombination 2
tae03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 2
tae03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
hvu00230 Purine metabolism 2
hvu01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835514 103844885 106434510 111212774 107947920 107903527 102624634 100801335 100252167 18095655 11436847 101264663 107059491 102587218 107790515 107763165 4337137 100285133 123190879 123055023 123047225 123428238 8079542 100839664 5728367
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