ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	AT5G60530	late embryogenesis abundant protein-related / LEA protein-like protein
ath-r.7	AT5G60530	late embryogenesis abundant protein-related / LEA protein-like protein
ath-m.9	AT5G60530	late embryogenesis abundant protein-related / LEA protein-like protein
ath-e.2	AT5G60530	late embryogenesis abundant protein-related / LEA protein-like protein
ath-m.4.bio	AT5G60530	late embryogenesis abundant protein-related / LEA protein-like protein
ath-m.4.hor	AT5G60530	late embryogenesis abundant protein-related / LEA protein-like protein
ath-m.4.lig	AT5G60530	late embryogenesis abundant protein-related / LEA protein-like protein
ath-m.4.str	AT5G60530	late embryogenesis abundant protein-related / LEA protein-like protein
ath-m.4.tis	AT5G60530	late embryogenesis abundant protein-related / LEA protein-like protein
ath-u.5	AT1G54890	Late embryogenesis abundant (LEA) protein-like protein
ath-u.5	AT3G19430	late embryogenesis abundant protein-related / LEA protein-like protein
ath-u.5	AT4G27400	Late embryogenesis abundant (LEA) protein-like protein
bna-r.1	106386757	uncharacterized LOC106386757
bna-r.1	106379780	ESX-1 secretion-associated protein EspI-like
bna-r.1	106379281	uncharacterized LOC106379281
ghi-r.1	107917575	uncharacterized LOC107917575
ghi-r.1	107917730	uncharacterized LOC107917730
gma-u.5	100817693	uncharacterized LOC100817693
gma-u.5	100817164	uncharacterized LOC100817164
gma-u.5	100808294	uncharacterized LOC100808294
vvi-u.5	100252062	uncharacterized LOC100252062
ppo-u.5	7478636	uncharacterized LOC7478636
mtr-u.5	25486308	uncharacterized LOC25486308
mtr-u.5	25487402	uncharacterized LOC25487402
mtr-u.5	25487405	uncharacterized LOC25487405
sly-u.5	101254662	uncharacterized LOC101254662
sot-r.1	102580165	uncharacterized LOC102580165
sot-r.1	102587977	uncharacterized LOC102587977
sot-r.1	102594637	putative NPIP-like protein
nta-r.1	107785878	uncharacterized LOC107785878
nta-r.1	107790507	uncharacterized LOC107790507
osa-u.5	4335768	uncharacterized LOC4335768
osa-u.5	9268587	uncharacterized LOC9268587
zma-u.5	100284560	uncharacterized LOC100284560
zma-u.5	103629277	late embryogenesis abundant protein-related / LEA protein-related
zma-u.5	103636720	late embryogenesis abundant protein-related / LEA protein-related
hvu-r.1	123440834	uncharacterized LOC123440834
hvu-r.1	123430752	uncharacterized LOC123430752
hvu-r.1	123430248	uncharacterized LOC123430248
sbi-r.1	8078043	uncharacterized LOC8078043
sbi-r.1	8078040	uncharacterized LOC8078040
bdi-r.1	100821155	uncharacterized LOC100821155
bdi-r.1	100846659	uncharacterized LOC100846659
bdi-r.1	100841132	uncharacterized LOC100841132

Top 50 coexpressed genes to AT5G60530 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT5G60530 (ath-u.5 coexpression data)

CoexMap"836174"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005737 [list] [network] cytoplasm

(14000 genes)

ISM

GO MF

Protein

NP_200861.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, extr 4, vacu 1

(predict for NP_200861.1)

Subcellular
localization
TargetP

scret 9

(predict for NP_200861.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT5G60530	ath-r.7 for AT5G60530	ath-m.9 for AT5G60530	ath-e.2 for AT5G60530	ath-m.4.bio for AT5G60530	ath-m.4.hor for AT5G60530	ath-m.4.lig for AT5G60530	ath-m.4.str for AT5G60530	ath-m.4.tis for AT5G60530	ath-u.5 for AT1G54890	ath-u.5 for AT3G19430	ath-u.5 for AT4G27400	bna-r.1 for 106386757	bna-r.1 for 106379780	bna-r.1 for 106379281	ghi-r.1 for 107917575	ghi-r.1 for 107917730	gma-u.5 for 100817693	gma-u.5 for 100817164	gma-u.5 for 100808294	vvi-u.5 for 100252062	ppo-u.5 for 7478636	mtr-u.5 for 25486308	mtr-u.5 for 25487402	mtr-u.5 for 25487405	sly-u.5 for 101254662	sot-r.1 for 102580165	sot-r.1 for 102587977	sot-r.1 for 102594637	nta-r.1 for 107785878	nta-r.1 for 107790507	osa-u.5 for 4335768	osa-u.5 for 9268587	zma-u.5 for 100284560	zma-u.5 for 103629277	zma-u.5 for 103636720	hvu-r.1 for 123440834	hvu-r.1 for 123430752	hvu-r.1 for 123430248	sbi-r.1 for 8078043	sbi-r.1 for 8078040	bdi-r.1 for 100821155	bdi-r.1 for 100846659	bdi-r.1 for 100841132

Ortholog

Ortholog ID: 209

Species

ath

bna

ghi

gma

ppo

mtr

sly

sot

nta

osa

zma

hvu

sbi

bdi

Symbol

Function^*

late embryogenesis abundant protein-related / LEA protein-like protein

Late embryogenesis abundant (LEA) protein-like protein

ESX-1 secretion-associated protein EspI-like

uncharacterized LOC106379281

uncharacterized BNAC09G35810D

uncharacterized LOC107917575

uncharacterized LOC107917571

uncharacterized LOC107891484

uncharacterized LOC100817693

uncharacterized LOC100817164

uncharacterized LOC7478636

uncharacterized LOC25487402

uncharacterized LOC25487405

uncharacterized LOC25502551

uncharacterized LOC101254662

uncharacterized LOC102587977

putative NPIP-like protein

uncharacterized LOC102583615

uncharacterized LOC107801635

uncharacterized LOC107803202

uncharacterized LOC107817731

uncharacterized LOC9268587

uncharacterized LOC4349789

late embryogenesis abundant protein-related / LEA protein-related

root cap periphery gene 2

uncharacterized LOC123430752

uncharacterized LOC123426650

uncharacterized LOC123447307

uncharacterized LOC110435732

uncharacterized LOC100846659

uncharacterized LOC100836864

uncharacterized LOC100825097

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00040	Pentose and glucuronate interconversions	2
ath00380	Tryptophan metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00040	Pentose and glucuronate interconversions	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00380	Tryptophan metabolism	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04016	MAPK signaling pathway - plant	6
ghi04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04016	MAPK signaling pathway - plant	6
ghi04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00940	Phenylpropanoid biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00940	Phenylpropanoid biosynthesis	3
mtr00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04814	Motor proteins	2
sot01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00940	Phenylpropanoid biosynthesis	5
sot00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00052	Galactose metabolism	2
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00940	Phenylpropanoid biosynthesis	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00999	Biosynthesis of various plant secondary metabolites	4
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00940	Phenylpropanoid biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00940	Phenylpropanoid biosynthesis	3

Expression

Expression pattern

Entrez Gene ID^*

836174

828848

836173

106379780

106379281

106363951

107917575

107917571

107891484

100817693

100817164

7478636

25487402

25487405

25502551

101254662

102587977

102594637

102583615

107801635

107803202

107817731

9268587

4349789

103652891

542557

123430752

123426650

123447307

110435732

100846659

100836864

100825097

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Species	ath	bna	ghi	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	hvu	sbi	bdi	bra	cre	tae	cit
Paralog	12	3	2	3	1	1	3	1	3	2	2	3	3	2	3	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT5G60530 (ath-u.5 coexpression data)

Top 50 enrichment test to AT5G60530 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**