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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT5G66240   Transducin/WD40 repeat-like superfamily protein 
 ath-r.7   AT5G66240   Transducin/WD40 repeat-like superfamily protein 
 ath-m.9   AT5G66240   Transducin/WD40 repeat-like superfamily protein 
 ath-e.2   AT5G66240   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.bio   AT5G66240   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.hor   AT5G66240   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.lig   AT5G66240   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.str   AT5G66240   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.tis   AT5G66240   Transducin/WD40 repeat-like superfamily protein 
 gma-u.5   100810444   protein ANTHESIS POMOTING FACTOR 1 
 gma-u.5   100807825   protein ANTHESIS POMOTING FACTOR 1 
 vvi-u.5   100255744   protein ANTHESIS POMOTING FACTOR 1 
 ppo-u.5   18099200   protein ANTHESIS POMOTING FACTOR 1 
 mtr-u.5   25501403   protein ANTHESIS POMOTING FACTOR 1 
 sly-u.5   101258611   ubiquitin ligase complex subunit 1-like 
 osa-u.5   4343770   protein ANTHESIS POMOTING FACTOR 1 
 zma-u.5   100273578   Set1 complex component swd2 

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Top 50 coexpressed genes to AT5G66240 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G66240 (ath-u.5 coexpression data)

CoexMap"836756"


athAT5G66240 | Entrez gene ID : 836756      
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 9 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03015 [list] [network] mRNA surveillance pathway (119 genes)
GO BP
GO:0009827 [list] [network] plant-type cell wall modification  (68 genes)  IMP  
GO CC
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (121 genes)  ISS  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001190633.1 [sequence] [blastp]
NP_569031.1 [sequence] [blastp]
NP_851281.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 2,  nucl 1  (predict for NP_001190633.1)
cyto 4,  nucl 3,  extr 1,  nucl_plas 1  (predict for NP_569031.1)
cyto 6,  chlo 2,  nucl 1  (predict for NP_851281.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001190633.1)
other 8  (predict for NP_569031.1)
other 8  (predict for NP_851281.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT5G66240

.
ath-r.7
for
AT5G66240

.
ath-m.9
for
AT5G66240

.
ath-e.2
for
AT5G66240

.
ath-m.4.bio
for
AT5G66240

.
ath-m.4.hor
for
AT5G66240

.
ath-m.4.lig
for
AT5G66240

.
ath-m.4.str
for
AT5G66240

.
ath-m.4.tis
for
AT5G66240

.
gma-u.5
for
100810444

.
gma-u.5
for
100807825

.
vvi-u.5
for
100255744

.
ppo-u.5
for
18099200

.
mtr-u.5
for
25501403

.
sly-u.5
for
101258611

.
osa-u.5
for
4343770

.
zma-u.5
for
100273578

.


Ortholog ID: 10422
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sbi sot cit bdi nta nta
Symbol AT5G66240 LOC100807825 LOC100810444 LOC101258611 LOC4343770 LOC100273578 LOC103855351 LOC100255744 LOC18099200 LOC25501403 LOC123096107 LOC123091105 LOC123447758 LOC107936580 LOC107909448 LOC106406018 LOC106406033 LOC8060458 LOC8081603 LOC102588521 LOC102622131 LOC100832902 LOC107800485 LOC107811301
Function* Transducin/WD40 repeat-like superfamily protein protein ANTHESIS POMOTING FACTOR 1 protein ANTHESIS POMOTING FACTOR 1 ubiquitin ligase complex subunit 1-like protein ANTHESIS POMOTING FACTOR 1 Set1 complex component swd2 protein ANTHESIS POMOTING FACTOR 1 protein ANTHESIS POMOTING FACTOR 1 protein ANTHESIS POMOTING FACTOR 1 protein ANTHESIS POMOTING FACTOR 1 protein ANTHESIS POMOTING FACTOR 1 protein ANTHESIS POMOTING FACTOR 1 protein ANTHESIS POMOTING FACTOR 1 protein ANTHESIS POMOTING FACTOR 1 protein ANTHESIS POMOTING FACTOR 1 protein ANTHESIS POMOTING FACTOR 1-like protein ANTHESIS POMOTING FACTOR 1 protein ANTHESIS POMOTING FACTOR 1 protein ANTHESIS POMOTING FACTOR 1 WD repeat-containing protein 82-B protein ANTHESIS POMOTING FACTOR 1 protein ANTHESIS POMOTING FACTOR 1 protein ANTHESIS POMOTING FACTOR 1 protein ANTHESIS POMOTING FACTOR 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 2
osa03015 mRNA surveillance pathway 2
osa03022 Basal transcription factors 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03420 Nucleotide excision repair 4
zma04120 Ubiquitin mediated proteolysis 3
zma04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 4
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
mtr03040 Spliceosome 3
mtr03020 RNA polymerase 3
mtr03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 6
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00710 Carbon fixation by Calvin cycle 2
hvu01200 Carbon metabolism 2
hvu01230 Biosynthesis of amino acids 2
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 3
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 3
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
sbi04075 Plant hormone signal transduction 2
sbi03420 Nucleotide excision repair 2
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00280 Valine, leucine and isoleucine degradation 2
sbi00410 beta-Alanine metabolism 2
sbi00640 Propanoate metabolism 2
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 4
bdi03015 mRNA surveillance pathway 2
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
nta00770 Pantothenate and CoA biosynthesis 2
nta01240 Biosynthesis of cofactors 2
nta03022 Basal transcription factors 2
nta03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836756 100807825 100810444 101258611 4343770 100273578 103855351 100255744 18099200 25501403 123096107 123091105 123447758 107936580 107909448 106406018 106406033 8060458 8081603 102588521 102622131 100832902 107800485 107811301
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