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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT1G09130   ATP-dependent caseinolytic (Clp) protease/crotonase family protein 
 ath-r.7   AT1G09130   ATP-dependent caseinolytic (Clp) protease/crotonase family protein 
 ath-m.9   AT1G09130   ATP-dependent caseinolytic (Clp) protease/crotonase family protein 
 ath-e.2   AT1G09130   ATP-dependent caseinolytic (Clp) protease/crotonase family protein 
 ath-m.4.bio   AT1G09130   ATP-dependent caseinolytic (Clp) protease/crotonase family protein 
 ath-m.4.hor   AT1G09130   ATP-dependent caseinolytic (Clp) protease/crotonase family protein 
 ath-m.4.lig   AT1G09130   ATP-dependent caseinolytic (Clp) protease/crotonase family protein 
 ath-m.4.str   AT1G09130   ATP-dependent caseinolytic (Clp) protease/crotonase family protein 
 ath-m.4.tis   AT1G09130   ATP-dependent caseinolytic (Clp) protease/crotonase family protein 
 bra-r.6   103836358   ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic 
 bna-r.1   106453171   ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic 
 bna-r.1   106413839   ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic 
 ghi-r.1   107930939   ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic 
 ghi-r.1   107961929   ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic 
 cit-r.1   102612739   ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic 
 gma-u.5   100818038   ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic 
 vvi-u.5   100249495   ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic 
 ppo-u.5   7481734   ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic 
 mtr-u.5   11434169   ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic 
 sly-u.5   101253726   ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic 
 sot-r.1   102605608   ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic 
 nta-r.1   107808620   ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic 
 nta-r.1   107827580   ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic-like 
 osa-u.5   4332811   ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic 
 zma-u.5   100282645   ATP-dependent Clp protease proteolytic subunit 
 tae-r.2   123097501   ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic 
 tae-r.2   123091978   ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic 
 tae-r.2   123085850   ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic 
 hvu-r.1   123448625   ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic 
 sbi-r.1   8082668   ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic 
 bdi-r.1   100841462   ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic 
 cre-r.1   CHLRE_07g331500v5   uncharacterized protein 

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Top 50 coexpressed genes to AT1G09130 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G09130 (ath-u.5 coexpression data)

CoexMap"837432"


athAT1G09130 | Entrez gene ID : 837432      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 1 1 1 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009579 [list] [network] thylakoid  (507 genes)  HDA  
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA IDA  
GO:0009532 [list] [network] plastid stroma  (704 genes)  IDA  
GO:0005576 [list] [network] extracellular region  (3158 genes)  HDA  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001031008.1 [sequence] [blastp]
NP_001184945.1 [sequence] [blastp]
NP_563836.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  mito 1,  plas 1,  mito_plas 1  (predict for NP_001031008.1)
chlo 4,  plas 3,  mito 2  (predict for NP_001184945.1)
chlo 7,  mito 1,  plas 1,  mito_plas 1  (predict for NP_563836.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_001031008.1)
chlo 8  (predict for NP_001184945.1)
chlo 8  (predict for NP_563836.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT1G09130
ath-r.7
for
AT1G09130
ath-m.9
for
AT1G09130
ath-e.2
for
AT1G09130
ath-m.4.bio
for
AT1G09130
ath-m.4.hor
for
AT1G09130
ath-m.4.lig
for
AT1G09130
ath-m.4.str
for
AT1G09130
ath-m.4.tis
for
AT1G09130
bra-r.6
for
103836358
bna-r.1
for
106453171
bna-r.1
for
106413839
ghi-r.1
for
107930939
ghi-r.1
for
107961929
cit-r.1
for
102612739
gma-u.5
for
100818038
vvi-u.5
for
100249495
ppo-u.5
for
7481734
mtr-u.5
for
11434169
sly-u.5
for
101253726
sot-r.1
for
102605608
nta-r.1
for
107808620
nta-r.1
for
107827580
osa-u.5
for
4332811
zma-u.5
for
100282645
tae-r.2
for
123097501
tae-r.2
for
123091978
tae-r.2
for
123085850
hvu-r.1
for
123448625
sbi-r.1
for
8082668
bdi-r.1
for
100841462
cre-r.1
for
CHLRE_07g331500v5


Ortholog ID: 9766
Species ath bra bna bna ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol AT1G09130 LOC103836358 LOC106453171 LOC106413839 LOC107930939 LOC107961929 LOC102612739 LOC100818038 LOC100249495 LOC7481734 LOC11434169 LOC101253726 LOC102605608 LOC107808620 LOC107827580 LOC4332811 LOC100282645 LOC123097501 LOC123091978 LOC123085850 LOC123448625 LOC8082668 LOC100841462 CHLRE_07g331500v5
Function* ATP-dependent caseinolytic (Clp) protease/crotonase family protein ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic-like ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic ATP-dependent Clp protease proteolytic subunit ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00785 Lipoic acid metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00785 Lipoic acid metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00790 Folate biosynthesis 3
ghi01240 Biosynthesis of cofactors 3
ghi04981 Folate transport and metabolism 3
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00790 Folate biosynthesis 3
ghi01240 Biosynthesis of cofactors 3
ghi04981 Folate transport and metabolism 3
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00480 Glutathione metabolism 2
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01232 Nucleotide metabolism 2
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
tae00240 Pyrimidine metabolism 3
tae01232 Nucleotide metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00350 Tyrosine metabolism 2
sbi00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 3
bdi00520 Amino sugar and nucleotide sugar metabolism 2
bdi00561 Glycerolipid metabolism 2
bdi00566 Sulfoquinovose metabolism 2
bdi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01200 Carbon metabolism 2
cre01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837432 103836358 106453171 106413839 107930939 107961929 102612739 100818038 100249495 7481734 11434169 101253726 102605608 107808620 107827580 4332811 100282645 123097501 123091978 123085850 123448625 8082668 100841462 5716097
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