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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   EMB3103   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-r.7   EMB3103   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.9   EMB3103   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-e.2   EMB3103   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.bio   EMB3103   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.hor   EMB3103   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.lig   EMB3103   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.str   EMB3103   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.tis   EMB3103   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.5   100809049   pentatricopeptide repeat-containing protein At1g10910, chloroplastic 
 vvi-u.5   100261803   pentatricopeptide repeat-containing protein At1g10910, chloroplastic 
 ppo-u.5   18096625   pentatricopeptide repeat-containing protein At1g10910, chloroplastic 
 ppo-u.5   7486675   pentatricopeptide repeat-containing protein At1g10910, chloroplastic 
 mtr-u.5   11433858   pentatricopeptide repeat-containing protein At1g10910, chloroplastic 
 sly-u.5   101261877   pentatricopeptide repeat-containing protein At1g10910, chloroplastic 
 osa-u.5   4324682   pentatricopeptide repeat-containing protein At1g10910, chloroplastic 
 zma-u.5   103651615   pentatricopeptide repeat-containing protein At1g10910, chloroplastic 

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Top 50 coexpressed genes to EMB3103 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to EMB3103 (ath-u.5 coexpression data)

CoexMap"837634"


athEMB3103 | Entrez gene ID : 837634      
Species ath gma vvi ppo mtr sly osa zma hvu sot tae nta bra cit ghi bna bdi sbi cre
Paralog 9 1 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1900865 [list] [network] chloroplast RNA modification  (18 genes)  IMP  
GO:0009658 [list] [network] chloroplast organization  (197 genes)  IMP  
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO:0009507 [list] [network] chloroplast  (5014 genes)  IDA ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001320560.1 [sequence] [blastp]
NP_172560.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto 3,  cysk_nucl 3,  nucl_plas 3  (predict for NP_001320560.1)
nucl 5,  cyto 3,  cysk_nucl 3,  nucl_plas 3  (predict for NP_172560.2)
Subcellular
localization
TargetP
chlo 4  (predict for NP_001320560.1)
chlo 4  (predict for NP_172560.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
EMB3103

.
ath-r.7
for
EMB3103

.
ath-m.9
for
EMB3103

.
ath-e.2
for
EMB3103

.
ath-m.4.bio
for
EMB3103

.
ath-m.4.hor
for
EMB3103

.
ath-m.4.lig
for
EMB3103

.
ath-m.4.str
for
EMB3103

.
ath-m.4.tis
for
EMB3103

.
gma-u.5
for
100809049

.
vvi-u.5
for
100261803

.
ppo-u.5
for
18096625

.
ppo-u.5
for
7486675

.
mtr-u.5
for
11433858

.
sly-u.5
for
101261877

.
osa-u.5
for
4324682

.
zma-u.5
for
103651615

.


Ortholog ID: 11042
Species ath gma sly osa zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol EMB3103 LOC100809049 LOC101261877 LOC4324682 LOC103651615 LOC103871869 LOC100261803 LOC7486675 LOC18096625 LOC11433858 LOC123061310 LOC123069943 LOC123443707 LOC107907708 LOC107927989 LOC106350122 LOC106357945 LOC8078600 LOC102584578 LOC102607323 LOC100835537 LOC107797340 LOC107792065
Function* Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At1g10910, chloroplastic pentatricopeptide repeat-containing protein At1g10910, chloroplastic pentatricopeptide repeat-containing protein At1g10910, chloroplastic pentatricopeptide repeat-containing protein At1g10910, chloroplastic pentatricopeptide repeat-containing protein At1g10910, chloroplastic pentatricopeptide repeat-containing protein At1g10910, chloroplastic pentatricopeptide repeat-containing protein At1g10910, chloroplastic pentatricopeptide repeat-containing protein At1g10910, chloroplastic pentatricopeptide repeat-containing protein At1g10910, chloroplastic pentatricopeptide repeat-containing protein At1g10910, chloroplastic pentatricopeptide repeat-containing protein At1g10910, chloroplastic pentatricopeptide repeat-containing protein At1g10910, chloroplastic pentatricopeptide repeat-containing protein At1g10910, chloroplastic pentatricopeptide repeat-containing protein At1g10910, chloroplastic pentatricopeptide repeat-containing protein At1g10910, chloroplastic pentatricopeptide repeat-containing protein At1g10910, chloroplastic pentatricopeptide repeat-containing protein At1g10910, chloroplastic pentatricopeptide repeat-containing protein At1g10910, chloroplastic pentatricopeptide repeat-containing protein At1g10910, chloroplastic pentatricopeptide repeat-containing protein At1g10910, chloroplastic pentatricopeptide repeat-containing protein At1g10910, chloroplastic-like pentatricopeptide repeat-containing protein At1g10910, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 3
zma00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00440 Phosphonate and phosphinate metabolism 3
ghi00564 Glycerophospholipid metabolism 3
ghi00565 Ether lipid metabolism 3
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 3
bna04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 2
bna04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837634 100809049 101261877 4324682 103651615 103871869 100261803 7486675 18096625 11433858 123061310 123069943 123443707 107907708 107927989 106350122 106357945 8078600 102584578 102607323 100835537 107797340 107792065
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