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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   SHH1   SAWADEE HOMEODOMAIN protein 
 ath-r.7   SHH1   SAWADEE HOMEODOMAIN protein 
 ath-e.2   SHH1   SAWADEE HOMEODOMAIN protein 
 bra-r.6   103872312   protein SAWADEE HOMEODOMAIN HOMOLOG 1 
 bna-r.1   106346679   protein SAWADEE HOMEODOMAIN HOMOLOG 1 
 bna-r.1   106452085   protein SAWADEE HOMEODOMAIN HOMOLOG 1 
 ghi-r.1   107901078   protein SAWADEE HOMEODOMAIN HOMOLOG 1 
 ghi-r.1   107897093   protein SAWADEE HOMEODOMAIN HOMOLOG 2 
 ghi-r.1   107897346   protein SAWADEE HOMEODOMAIN HOMOLOG 1 
 cit-r.1   102608072   protein SAWADEE HOMEODOMAIN HOMOLOG 1 
 cit-r.1   102626883   protein SAWADEE HOMEODOMAIN HOMOLOG 1-like 
 gma-u.5   100800332   protein SAWADEE HOMEODOMAIN HOMOLOG 1 
 gma-u.5   100817690   protein SAWADEE HOMEODOMAIN HOMOLOG 1 
 gma-u.5   100801021   protein SAWADEE HOMEODOMAIN HOMOLOG 2 
 vvi-u.5   100245843   protein SAWADEE HOMEODOMAIN HOMOLOG 1 
 vvi-u.5   100258357   protein SAWADEE HOMEODOMAIN HOMOLOG 1 
 ppo-u.5   7476692   protein SAWADEE HOMEODOMAIN HOMOLOG 1 
 ppo-u.5   7470578   protein SAWADEE HOMEODOMAIN HOMOLOG 1 
 mtr-u.5   25500348   protein SAWADEE HOMEODOMAIN HOMOLOG 1 
 mtr-u.5   25490138   protein SAWADEE HOMEODOMAIN HOMOLOG 1 
 sly-u.5   101256958   protein SAWADEE HOMEODOMAIN HOMOLOG 1 
 sly-u.5   101249746   protein SAWADEE HOMEODOMAIN HOMOLOG 2-like 
 sly-u.5   101246504   protein SAWADEE HOMEODOMAIN HOMOLOG 1 
 sot-r.1   102579829   protein SAWADEE HOMEODOMAIN HOMOLOG 1 
 sot-r.1   102583573   protein SAWADEE HOMEODOMAIN HOMOLOG 2-like 
 sot-r.1   102589858   protein SAWADEE HOMEODOMAIN HOMOLOG 2-like 
 nta-r.1   107791358   protein SAWADEE HOMEODOMAIN HOMOLOG 1 
 nta-r.1   107819104   protein SAWADEE HOMEODOMAIN HOMOLOG 1 
 nta-r.1   107798862   protein SAWADEE HOMEODOMAIN HOMOLOG 1-like 
 osa-u.5   4346807   protein SAWADEE HOMEODOMAIN HOMOLOG 1 
 zma-u.5   100192562   uncharacterized LOC100192562 
 tae-r.2   123103535   protein SAWADEE HOMEODOMAIN HOMOLOG 2 
 tae-r.2   123111751   protein SAWADEE HOMEODOMAIN HOMOLOG 2 
 tae-r.2   123121311   protein SAWADEE HOMEODOMAIN HOMOLOG 2 
 hvu-r.1   123452649   protein SAWADEE HOMEODOMAIN HOMOLOG 2-like 
 sbi-r.1   8054600   protein SAWADEE HOMEODOMAIN HOMOLOG 2 
 bdi-r.1   100829241   protein SAWADEE HOMEODOMAIN HOMOLOG 1 

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Top 50 coexpressed genes to SHH1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SHH1 (ath-u.5 coexpression data)

CoexMap"838088"


athSHH1 | Entrez gene ID : 838088      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 1 2 3 2 3 2 2 2 3 3 3 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006346 [list] [network] DNA methylation-dependent constitutive heterochromatin formation  (53 genes)  IMP  
GO:0031047 [list] [network] regulatory ncRNA-mediated gene silencing  (179 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0003682 [list] [network] chromatin binding  (103 genes)  IEA  
Protein NP_001031048.1 [sequence] [blastp]
NP_001319007.1 [sequence] [blastp]
NP_001321872.1 [sequence] [blastp]
NP_849666.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  chlo 1,  cyto 1,  extr 1,  vacu 1  (predict for NP_001031048.1)
nucl 9,  chlo 1,  extr 1  (predict for NP_001319007.1)
nucl 4,  cyto 3,  extr 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001321872.1)
nucl 7,  chlo 1,  cyto 1,  extr 1,  vacu 1  (predict for NP_849666.2)
Subcellular
localization
TargetP
other 9  (predict for NP_001031048.1)
other 9  (predict for NP_001319007.1)
other 9  (predict for NP_001321872.1)
other 9  (predict for NP_849666.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
SHH1
ath-r.7
for
SHH1
ath-e.2
for
SHH1
bra-r.6
for
103872312
bna-r.1
for
106346679
bna-r.1
for
106452085
ghi-r.1
for
107901078
ghi-r.1
for
107897093
ghi-r.1
for
107897346
cit-r.1
for
102608072
cit-r.1
for
102626883
gma-u.5
for
100800332
gma-u.5
for
100817690
gma-u.5
for
100801021
vvi-u.5
for
100245843
vvi-u.5
for
100258357
ppo-u.5
for
7476692
ppo-u.5
for
7470578
mtr-u.5
for
25500348
mtr-u.5
for
25490138
sly-u.5
for
101256958
sly-u.5
for
101249746
sly-u.5
for
101246504
sot-r.1
for
102579829
sot-r.1
for
102583573
sot-r.1
for
102589858
nta-r.1
for
107791358
nta-r.1
for
107819104
nta-r.1
for
107798862
osa-u.5
for
4346807
zma-u.5
for
100192562
tae-r.2
for
123103535
tae-r.2
for
123111751
tae-r.2
for
123121311
hvu-r.1
for
123452649
sbi-r.1
for
8054600
bdi-r.1
for
100829241


Ortholog ID: 3997
Species ath bra bna bna ghi ghi ghi cit cit gma gma gma vvi vvi ppo ppo mtr mtr sly sly sly sot sot sot nta nta nta osa zma tae tae tae hvu sbi bdi
Symbol SHH1 LOC103872312 LOC106346679 LOC106452085 LOC107897093 LOC107897346 LOC107951403 LOC102608072 LOC102626883 LOC100800332 LOC100817690 LOC100799110 LOC100245843 LOC100258357 LOC7476692 LOC7470578 LOC25500348 LOC25490138 LOC101256958 LOC101249746 LOC101246504 LOC102579829 LOC102583573 LOC102589858 LOC107798862 LOC107785022 LOC107803460 LOC4346807 LOC100192562 LOC123103535 LOC123111751 LOC123121311 LOC123452649 LOC8054600 LOC100829241
Function* SAWADEE HOMEODOMAIN protein protein SAWADEE HOMEODOMAIN HOMOLOG 1 protein SAWADEE HOMEODOMAIN HOMOLOG 1 protein SAWADEE HOMEODOMAIN HOMOLOG 1 protein SAWADEE HOMEODOMAIN HOMOLOG 2 protein SAWADEE HOMEODOMAIN HOMOLOG 1 protein SAWADEE HOMEODOMAIN HOMOLOG 1 protein SAWADEE HOMEODOMAIN HOMOLOG 1 protein SAWADEE HOMEODOMAIN HOMOLOG 1-like protein SAWADEE HOMEODOMAIN HOMOLOG 1 protein SAWADEE HOMEODOMAIN HOMOLOG 1 protein SAWADEE HOMEODOMAIN HOMOLOG 1 protein SAWADEE HOMEODOMAIN HOMOLOG 1 protein SAWADEE HOMEODOMAIN HOMOLOG 1 protein SAWADEE HOMEODOMAIN HOMOLOG 1 protein SAWADEE HOMEODOMAIN HOMOLOG 1 protein SAWADEE HOMEODOMAIN HOMOLOG 1 protein SAWADEE HOMEODOMAIN HOMOLOG 1 protein SAWADEE HOMEODOMAIN HOMOLOG 1 protein SAWADEE HOMEODOMAIN HOMOLOG 2-like protein SAWADEE HOMEODOMAIN HOMOLOG 1 protein SAWADEE HOMEODOMAIN HOMOLOG 1 protein SAWADEE HOMEODOMAIN HOMOLOG 2-like protein SAWADEE HOMEODOMAIN HOMOLOG 2-like protein SAWADEE HOMEODOMAIN HOMOLOG 1-like protein SAWADEE HOMEODOMAIN HOMOLOG 2-like protein SAWADEE HOMEODOMAIN HOMOLOG 2 protein SAWADEE HOMEODOMAIN HOMOLOG 1 uncharacterized LOC100192562 protein SAWADEE HOMEODOMAIN HOMOLOG 2 protein SAWADEE HOMEODOMAIN HOMOLOG 2 protein SAWADEE HOMEODOMAIN HOMOLOG 2 protein SAWADEE HOMEODOMAIN HOMOLOG 2-like protein SAWADEE HOMEODOMAIN HOMOLOG 2 protein SAWADEE HOMEODOMAIN HOMOLOG 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 2
bna00750 Vitamin B6 metabolism 2
bna01240 Biosynthesis of cofactors 2
bna00240 Pyrimidine metabolism 2
bna01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 2
bna00750 Vitamin B6 metabolism 2
bna01240 Biosynthesis of cofactors 2
bna00010 Glycolysis / Gluconeogenesis 2
bna00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00350 Tyrosine metabolism 2
ghi03015 mRNA surveillance pathway 2
ghi03040 Spliceosome 2
ghi00240 Pyrimidine metabolism 2
ghi00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 3
cit03040 Spliceosome 3
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00280 Valine, leucine and isoleucine degradation 2
gma00410 beta-Alanine metabolism 2
gma00640 Propanoate metabolism 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr03013 Nucleocytoplasmic transport 2
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 3
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03410 Base excision repair 2
sly03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 8
sot04145 Phagosome 3
sot03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 6
sot03040 Spliceosome 3
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03020 RNA polymerase 2
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
osa00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 2
zma03083 Polycomb repressive complex 2
zma04120 Ubiquitin mediated proteolysis 2
zma03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 4
tae03420 Nucleotide excision repair 4
tae04016 MAPK signaling pathway - plant 2
tae04070 Phosphatidylinositol signaling system 2
tae04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00010 Glycolysis / Gluconeogenesis 4
tae00020 Citrate cycle (TCA cycle) 4
tae00620 Pyruvate metabolism 4
tae00785 Lipoic acid metabolism 4
tae01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 4
tae03420 Nucleotide excision repair 4
tae00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00190 Oxidative phosphorylation 2
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03020 RNA polymerase 2
sbi03420 Nucleotide excision repair 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04130 SNARE interactions in vesicular transport 2
bdi03015 mRNA surveillance pathway 2
bdi04382 Cornified envelope formation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838088 103872312 106346679 106452085 107897093 107897346 107951403 102608072 102626883 100800332 100817690 100799110 100245843 100258357 7476692 7470578 25500348 25490138 101256958 101249746 101246504 102579829 102583573 102589858 107798862 107785022 107803460 4346807 100192562 123103535 123111751 123121311 123452649 8054600 100829241
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