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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   EER4   Transcription initiation factor TFIID subunit A 
 ath-r.7   EER4   Transcription initiation factor TFIID subunit A 
 ath-m.9   EER4   Transcription initiation factor TFIID subunit A 
 ath-e.2   EER4   Transcription initiation factor TFIID subunit A 
 ath-m.4.bio   EER4   Transcription initiation factor TFIID subunit A 
 ath-m.4.hor   EER4   Transcription initiation factor TFIID subunit A 
 ath-m.4.lig   EER4   Transcription initiation factor TFIID subunit A 
 ath-m.4.str   EER4   Transcription initiation factor TFIID subunit A 
 ath-m.4.tis   EER4   Transcription initiation factor TFIID subunit A 
 bra-r.6   103842750   transcription initiation factor TFIID subunit 12b 
 bra-r.6   103872529   transcription initiation factor TFIID subunit 12b 
 bna-r.1   125574961   transcription initiation factor TFIID subunit 12b-like 
 bna-r.1   106447254   transcription initiation factor TFIID subunit 12b-like 
 bna-r.1   106430279   transcription initiation factor TFIID subunit 12b 
 ghi-r.1   107913860   transcription initiation factor TFIID subunit 12b 
 ghi-r.1   107960289   transcription initiation factor TFIID subunit 12b 
 ghi-r.1   121230842   transcription initiation factor TFIID subunit 12b 
 cit-r.1   102628367   transcription initiation factor TFIID subunit 12b 
 gma-u.5   100783017   transcription initiation factor TFIID subunit 12b 
 vvi-u.5   100248501   transcription initiation factor TFIID subunit 12b 
 ppo-u.5   7478108   transcription initiation factor TFIID subunit 12b 
 ppo-u.5   7478355   transcription initiation factor TFIID subunit 12b 
 mtr-u.5   11423979   transcription initiation factor TFIID subunit 12b 
 mtr-u.5   112417486   uncharacterized protein DDB_G0285291 
 sly-u.5   101258141   transcription initiation factor TFIID subunit 12b 
 sly-u.5   101245068   transcription initiation factor TFIID subunit 12b-like 
 sot-r.1   102593833   transcription initiation factor TFIID subunit 12b-like 
 sot-r.1   PPS7   transcription initiation factor TFIID subunit 12b-like 
 nta-r.1   107827222   transcription initiation factor TFIID subunit 12b 
 nta-r.1   107761582   transcription initiation factor TFIID subunit 12b-like 
 nta-r.1   107772958   transcription initiation factor TFIID subunit 12b-like 
 osa-u.5   4327470   transcription initiation factor TFIID subunit 12b 
 zma-u.5   100275267   uncharacterized LOC100275267 
 zma-u.5   100383633   transcription associated factor1 
 tae-r.2   123062588   transcription initiation factor TFIID subunit 12b 
 tae-r.2   123079746   transcription initiation factor TFIID subunit 12b 
 tae-r.2   123071404   transcription initiation factor TFIID subunit 12b 
 hvu-r.1   123404452   transcription initiation factor TFIID subunit 12b-like 
 hvu-r.1   123444903   transcription initiation factor TFIID subunit 12b 
 sbi-r.1   8060089   transcription initiation factor TFIID subunit 12b 
 bdi-r.1   100821508   transcription initiation factor TFIID subunit 12b 
 bdi-r.1   100821588   transcription initiation factor TFIID subunit 12b 

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Top 50 coexpressed genes to EER4 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to EER4 (ath-u.5 coexpression data)

CoexMap"838316"


athEER4 | Entrez gene ID : 838316      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 3 1 1 1 2 2 2 2 3 1 2 3 2 1 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03022 [list] [network] Basal transcription factors (55 genes)
GO BP
GO:0010104 [list] [network] regulation of ethylene-activated signaling pathway  (30 genes)  IMP  
GO:0009736 [list] [network] cytokinin-activated signaling pathway  (66 genes)  IMP  
GO:0009867 [list] [network] jasmonic acid mediated signaling pathway  (74 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_564023.1 [sequence] [blastp]
NP_849680.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  chlo 2  (predict for NP_564023.1)
nucl 7,  chlo 2  (predict for NP_849680.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_564023.1)
chlo 9  (predict for NP_849680.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
EER4
ath-r.7
for
EER4
ath-m.9
for
EER4
ath-e.2
for
EER4
ath-m.4.bio
for
EER4
ath-m.4.hor
for
EER4
ath-m.4.lig
for
EER4
ath-m.4.str
for
EER4
ath-m.4.tis
for
EER4
bra-r.6
for
103842750
bra-r.6
for
103872529
bna-r.1
for
125574961
bna-r.1
for
106447254
bna-r.1
for
106430279
ghi-r.1
for
107913860
ghi-r.1
for
107960289
ghi-r.1
for
121230842
cit-r.1
for
102628367
gma-u.5
for
100783017
vvi-u.5
for
100248501
ppo-u.5
for
7478108
ppo-u.5
for
7478355
mtr-u.5
for
11423979
mtr-u.5
for
112417486
sly-u.5
for
101258141
sly-u.5
for
101245068
sot-r.1
for
102593833
sot-r.1
for
PPS7
nta-r.1
for
107827222
nta-r.1
for
107761582
nta-r.1
for
107772958
osa-u.5
for
4327470
zma-u.5
for
100275267
zma-u.5
for
100383633
tae-r.2
for
123062588
tae-r.2
for
123079746
tae-r.2
for
123071404
hvu-r.1
for
123404452
hvu-r.1
for
123444903
sbi-r.1
for
8060089
bdi-r.1
for
100821508
bdi-r.1
for
100821588


Ortholog ID: 4819
Species ath bra bra bna bna bna ghi ghi ghi cit gma vvi ppo ppo mtr mtr sly sly sot sot nta nta nta osa zma zma tae tae tae hvu hvu sbi bdi bdi
Symbol EER4 LOC103842750 LOC103872529 LOC125574961 LOC106430279 LOC106346867 LOC107913860 LOC107960289 LOC107897435 LOC102628367 LOC100783017 LOC100248501 LOC7478108 LOC7478355 LOC11423979 LOC112417486 LOC101258141 LOC101245068 LOC102593833 PPS7 LOC107827222 LOC107772958 LOC107819646 LOC4327470 LOC100275267 LOC100383633 LOC123062588 LOC123079746 LOC123071404 LOC123404452 LOC123444903 LOC8060089 LOC100821508 LOC100821588
Function* Transcription initiation factor TFIID subunit A transcription initiation factor TFIID subunit 12b transcription initiation factor TFIID subunit 12b transcription initiation factor TFIID subunit 12b-like transcription initiation factor TFIID subunit 12b transcription initiation factor TFIID subunit 12b transcription initiation factor TFIID subunit 12b transcription initiation factor TFIID subunit 12b transcription initiation factor TFIID subunit 12b transcription initiation factor TFIID subunit 12b transcription initiation factor TFIID subunit 12b transcription initiation factor TFIID subunit 12b transcription initiation factor TFIID subunit 12b transcription initiation factor TFIID subunit 12b transcription initiation factor TFIID subunit 12b uncharacterized protein DDB_G0285291 transcription initiation factor TFIID subunit 12b transcription initiation factor TFIID subunit 12b-like transcription initiation factor TFIID subunit 12b-like transcription initiation factor TFIID subunit 12b-like transcription initiation factor TFIID subunit 12b transcription initiation factor TFIID subunit 12b-like transcription initiation factor TFIID subunit 12b transcription initiation factor TFIID subunit 12b uncharacterized LOC100275267 transcription associated factor1 transcription initiation factor TFIID subunit 12b transcription initiation factor TFIID subunit 12b transcription initiation factor TFIID subunit 12b transcription initiation factor TFIID subunit 12b-like transcription initiation factor TFIID subunit 12b transcription initiation factor TFIID subunit 12b transcription initiation factor TFIID subunit 12b transcription initiation factor TFIID subunit 12b
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
bna03010 Ribosome 4
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 4
bna00970 Aminoacyl-tRNA biosynthesis 4
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00562 Inositol phosphate metabolism 4
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 4
ghi03082 ATP-dependent chromatin remodeling 2
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 4
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 4
ghi00071 Fatty acid degradation 2
ghi00410 beta-Alanine metabolism 2
ghi00592 alpha-Linolenic acid metabolism 2
ghi00640 Propanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00562 Inositol phosphate metabolism 2
cit04141 Protein processing in endoplasmic reticulum 2
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
ppo03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04144 Endocytosis 3
sot03250 Viral life cycle - HIV-1 2
sot03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00540 Lipopolysaccharide biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
osa03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
zma03022 Basal transcription factors 2
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
tae03022 Basal transcription factors 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 6
tae04136 Autophagy - other 4
tae03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 5
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 3
hvu03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838316 103842750 103872529 125574961 106430279 106346867 107913860 107960289 107897435 102628367 100783017 100248501 7478108 7478355 11423979 112417486 101258141 101245068 102593833 102604481 107827222 107772958 107819646 4327470 100275267 100383633 123062588 123079746 123071404 123404452 123444903 8060089 100821508 100821588
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