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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   ATARCA   Transducin/WD40 repeat-like superfamily protein 
 ath-r.7   ATARCA   Transducin/WD40 repeat-like superfamily protein 
 ath-m.9   ATARCA   Transducin/WD40 repeat-like superfamily protein 
 ath-e.2   ATARCA   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.bio   ATARCA   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.hor   ATARCA   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.lig   ATARCA   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.str   ATARCA   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.tis   ATARCA   Transducin/WD40 repeat-like superfamily protein 
 ath-u.5   RACK1C_AT   receptor for activated C kinase 1C 
 ath-u.5   RACK1B_AT   receptor for activated C kinase 1B 
 gma-u.5   100778205   guanine nucleotide-binding protein subunit beta-like protein-like 
 gma-u.5   547868   G beta-like protein 
 vvi-u.5   100249027   guanine nucleotide-binding protein subunit beta-like protein 
 ppo-u.5   7462475   guanine nucleotide-binding protein subunit beta-like protein 
 ppo-u.5   7493500   guanine nucleotide-binding protein subunit beta-like protein 
 mtr-u.5   11410151   guanine nucleotide-binding protein subunit beta-like protein 
 sly-u.5   ArcA1   guanine nucleotide-binding protein subunit beta-like protein 
 sly-u.5   101245737   small ribosomal subunit protein RACK1-like 
 sly-u.5   ArcA2   guanine nucleotide-binding protein subunit beta-like protein 
 osa-u.5   4339539   guanine nucleotide-binding protein subunit beta-like protein B 
 osa-u.5   4324115   guanine nucleotide-binding protein subunit beta-like protein A 
 zma-u.5   100216946   guanine nucleotide-binding protein beta subunit-like protein 
 zma-u.5   100280585   uncharacterized LOC100280585 

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Top 50 coexpressed genes to ATARCA (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to ATARCA (ath-u.5 coexpression data)

CoexMap"838388"


athATARCA | Entrez gene ID : 838388      
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 11 2 1 2 1 3 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03010 [list] [network] Ribosome (394 genes)
GO BP
GO:0006417 [list] [network] regulation of translation  (32 genes)  IGI  
GO:0010476 [list] [network] gibberellin mediated signaling pathway  (49 genes)  IMP  
GO:0009749 [list] [network] response to glucose  (71 genes)  IMP  
GO:0009967 [list] [network] positive regulation of signal transduction  (95 genes)  IMP  
GO:0009845 [list] [network] seed germination  (111 genes)  IGI  
GO:0009739 [list] [network] response to gibberellin  (125 genes)  IEP  
GO:0071215 [list] [network] cellular response to abscisic acid stimulus  (153 genes)  IEP  
GO:0010228 [list] [network] vegetative to reproductive phase transition of meristem  (186 genes)  IMP  
GO:0042254 [list] [network] ribosome biogenesis  (211 genes)  IGI  
GO CC
GO:0022626 [list] [network] cytosolic ribosome  (295 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  IDA  
GO:0005886 [list] [network] plasma membrane  (2598 genes)  ISM  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  HDA IDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA  
GO MF
GO:0005078 [list] [network] MAP-kinase scaffold activity  (4 genes)  IMP  
GO:0060090 [list] [network] molecular adaptor activity  (805 genes)  IDA  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_173248.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 4,  cyto_nucl 4  (predict for NP_173248.1)
Subcellular
localization
TargetP
other 9  (predict for NP_173248.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
ATARCA

.
ath-r.7
for
ATARCA

.
ath-m.9
for
ATARCA

.
ath-e.2
for
ATARCA

.
ath-m.4.bio
for
ATARCA

.
ath-m.4.hor
for
ATARCA

.
ath-m.4.lig
for
ATARCA

.
ath-m.4.str
for
ATARCA

.
ath-m.4.tis
for
ATARCA

.
ath-u.5
for
RACK1C_AT

.
ath-u.5
for
RACK1B_AT

.
gma-u.5
for
100778205

.
gma-u.5
for
547868

.
vvi-u.5
for
100249027

.
ppo-u.5
for
7462475

.
ppo-u.5
for
7493500

.
mtr-u.5
for
11410151

.
sly-u.5
for
ArcA1

.
sly-u.5
for
101245737

.
sly-u.5
for
ArcA2

.
osa-u.5
for
4339539

.
osa-u.5
for
4324115

.
zma-u.5
for
100216946

.
zma-u.5
for
100280585

.


Ortholog ID: 2150
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit bdi bdi nta nta
Symbol RACK1B_AT RACK1C_AT LOC547868 LOC100778205 ArcA1 ArcA2 LOC4324115 LOC4339539 LOC100280585 LOC100216946 LOC103835923 LOC103872580 LOC100249027 LOC7462475 LOC7493500 LOC11410151 LOC123078946 LOC123144251 LOC123449378 LOC123444140 LOC107941463 LOC107931035 LOC125609223 LOC106382095 CHLRE_06g278222v5 LOC8063065 LOC8068033 LOC102585360 LOC102606370 LOC102610028 LOC100844071 LOC100836449 LOC107781651 LOC107772203
Function* receptor for activated C kinase 1B receptor for activated C kinase 1C G beta-like protein guanine nucleotide-binding protein subunit beta-like protein-like guanine nucleotide-binding protein subunit beta-like protein guanine nucleotide-binding protein subunit beta-like protein guanine nucleotide-binding protein subunit beta-like protein A guanine nucleotide-binding protein subunit beta-like protein B uncharacterized LOC100280585 guanine nucleotide-binding protein beta subunit-like protein receptor for activated C kinase 1A guanine nucleotide-binding protein subunit beta-like protein guanine nucleotide-binding protein subunit beta-like protein guanine nucleotide-binding protein subunit beta-like protein guanine nucleotide-binding protein subunit beta-like protein guanine nucleotide-binding protein subunit beta-like protein guanine nucleotide-binding protein subunit beta-like protein A guanine nucleotide-binding protein subunit beta-like protein A guanine nucleotide-binding protein subunit beta-like protein A guanine nucleotide-binding protein subunit beta-like protein A guanine nucleotide-binding protein subunit beta-like protein guanine nucleotide-binding protein subunit beta-like protein receptor for activated C kinase 1B receptor for activated C kinase 1B uncharacterized protein guanine nucleotide-binding protein subunit beta-like protein A guanine nucleotide-binding protein subunit beta-like protein A guanine nucleotide-binding protein subunit beta-like protein guanine nucleotide-binding protein subunit beta-like protein guanine nucleotide-binding protein subunit beta-like protein guanine nucleotide-binding protein subunit beta-like protein A guanine nucleotide-binding protein subunit beta-like protein A small ribosomal subunit protein RACK1-like small ribosomal subunit protein RACK1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 10
ath03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 15
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 14
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 18
zma04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 12
vvi04120 Ubiquitin mediated proteolysis 2
vvi00230 Purine metabolism 2
vvi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 13
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 12
hvu03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 13
hvu03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 13
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 14
cre01230 Biosynthesis of amino acids 3
cre03013 Nucleocytoplasmic transport 2
cre00220 Arginine biosynthesis 2
cre00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 11
sbi03040 Spliceosome 2
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 13
sot03013 Nucleocytoplasmic transport 5
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 15
sot03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 13
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 12
bdi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 10
bdi03013 Nucleocytoplasmic transport 2
bdi00230 Purine metabolism 2
bdi00240 Pyrimidine metabolism 2
bdi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 10
nta00261 Monobactam biosynthesis 2
nta00300 Lysine biosynthesis 2
nta01230 Biosynthesis of amino acids 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 14
nta00261 Monobactam biosynthesis 2
nta00300 Lysine biosynthesis 2
nta01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 841284 821338 547868 100778205 543508 543509 4324115 4339539 100280585 100216946 103835923 103872580 100249027 7462475 7493500 11410151 123078946 123144251 123449378 123444140 107941463 107931035 125609223 106382095 5723548 8063065 8068033 102585360 102606370 102610028 100844071 100836449 107781651 107772203
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