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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   BEE1   BR enhanced expression 1 
 ath-r.7   BEE1   BR enhanced expression 1 
 ath-m.9   BEE1   BR enhanced expression 1 
 ath-e.2   BEE1   BR enhanced expression 1 
 ath-m.4.bio   BEE1   BR enhanced expression 1 
 ath-m.4.hor   BEE1   BR enhanced expression 1 
 ath-m.4.lig   BEE1   BR enhanced expression 1 
 ath-m.4.str   BEE1   BR enhanced expression 1 
 ath-m.4.tis   BEE1   BR enhanced expression 1 
 ath-u.5   BEE3   BR enhanced expression 3 
 bra-r.6   103831859   transcription factor BEE 3 
 bra-r.6   103872602   transcription factor BEE 1 
 ghi-r.1   107926665   transcription factor BEE 1 
 ghi-r.1   121206248   transcription factor BEE 3 
 cit-r.1   102630474   transcription factor BEE 3 
 vvi-u.5   100247374   transcription factor BEE 3 
 ppo-u.5   7493520   transcription factor BEE 3 
 mtr-u.5   11438389   transcription factor BEE 3 
 sly-u.5   101257639   transcription factor BEE 1-like 
 sot-r.1   102581324   transcription factor BEE 1-like 
 sot-r.1   102591506   transcription factor BEE 3 
 nta-r.1   107760392   transcription factor BEE 1 
 nta-r.1   107816606   transcription factor BEE 3-like 
 nta-r.1   107806000   transcription factor BEE 3 

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Top 50 coexpressed genes to BEE1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to BEE1 (ath-u.5 coexpression data)

CoexMap"838421"


athBEE1 | Entrez gene ID : 838421      
Species ath bra ghi cit vvi ppo mtr sly sot nta bdi osa tae bna zma cre sbi gma hvu
Paralog 10 2 2 1 1 1 1 1 2 3 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1902448 [list] [network] positive regulation of shade avoidance  (4 genes)  IMP  
GO:2000762 [list] [network] regulation of phenylpropanoid metabolic process  (29 genes)  IMP  
GO:0006351 [list] [network] DNA-templated transcription  (160 genes)  IMP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  IEA TAS  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0003677 [list] [network] DNA binding  (1274 genes)  IDA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001321164.1 [sequence] [blastp]
NP_173276.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for NP_001321164.1)
nucl 9  (predict for NP_173276.2)
Subcellular
localization
TargetP
other 6  (predict for NP_001321164.1)
other 6  (predict for NP_173276.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
BEE1
ath-r.7
for
BEE1
ath-m.9
for
BEE1
ath-e.2
for
BEE1
ath-m.4.bio
for
BEE1
ath-m.4.hor
for
BEE1
ath-m.4.lig
for
BEE1
ath-m.4.str
for
BEE1
ath-m.4.tis
for
BEE1
ath-u.5
for
BEE3
bra-r.6
for
103831859
bra-r.6
for
103872602
ghi-r.1
for
107926665
ghi-r.1
for
121206248
cit-r.1
for
102630474
vvi-u.5
for
100247374
ppo-u.5
for
7493520
mtr-u.5
for
11438389
sly-u.5
for
101257639
sot-r.1
for
102581324
sot-r.1
for
102591506
nta-r.1
for
107760392
nta-r.1
for
107816606
nta-r.1
for
107806000


Ortholog ID: 5619
Species ath ath bra bra ghi ghi cit gma vvi ppo mtr sly sot sot nta nta nta
Symbol BEE1 BEE3 LOC103831859 LOC103872602 LOC107888766 LOC121220966 LOC102630474 LOC100803700 LOC100247374 LOC7493520 LOC11438389 LOC101257639 LOC102581324 LOC102591506 LOC107760392 LOC107816606 LOC107806000
Function* BR enhanced expression 1 BR enhanced expression 3 transcription factor BEE 3 transcription factor BEE 1 transcription factor BEE 1 transcription factor BEE 3 transcription factor BEE 3 transcription factor BEE 1 transcription factor BEE 3 transcription factor BEE 3 transcription factor BEE 3 transcription factor BEE 1-like transcription factor BEE 1-like transcription factor BEE 3 transcription factor BEE 1 transcription factor BEE 3-like transcription factor BEE 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 4
bra04016 MAPK signaling pathway - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 4
cit01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00040 Pentose and glucuronate interconversions 4
vvi04016 MAPK signaling pathway - plant 3
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04016 MAPK signaling pathway - plant 3
ppo04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 3
mtr04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 7
sly04016 MAPK signaling pathway - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 8
sot04075 Plant hormone signal transduction 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 3
nta04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 5
nta04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 9
nta04075 Plant hormone signal transduction 8
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838421 843719 103831859 103872602 107888766 121220966 102630474 100803700 100247374 7493520 11438389 101257639 102581324 102591506 107760392 107816606 107806000
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