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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   BEE3   BR enhanced expression 3 
 ath-r.7   BEE3   BR enhanced expression 3 
 ath-m.9   BEE3   BR enhanced expression 3 
 ath-e.2   BEE3   BR enhanced expression 3 
 ath-m.4.bio   BEE3   BR enhanced expression 3 
 ath-m.4.hor   BEE3   BR enhanced expression 3 
 ath-m.4.lig   BEE3   BR enhanced expression 3 
 ath-m.4.str   BEE3   BR enhanced expression 3 
 ath-m.4.tis   BEE3   BR enhanced expression 3 
 ath-u.5   BEE1   BR enhanced expression 1 
 vvi-u.5   100247374   transcription factor BEE 3 
 ppo-u.5   7493520   transcription factor BEE 3 
 mtr-u.5   11438389   transcription factor BEE 3 
 sly-u.5   101257639   transcription factor BEE 1-like 

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Top 50 coexpressed genes to BEE3 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to BEE3 (ath-u.5 coexpression data)

CoexMap"843719"


athBEE3 | Entrez gene ID : 843719      
Species ath vvi ppo mtr sly bdi hvu bra cit gma bna sbi ghi osa sot nta cre tae zma
Paralog 10 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006351 [list] [network] DNA-templated transcription  (160 genes)  IMP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  IEA TAS  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001185394.1 [sequence] [blastp]
NP_177524.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto_nucl 5  (predict for NP_001185394.1)
nucl 9,  cyto_nucl 5  (predict for NP_177524.2)
Subcellular
localization
TargetP
other 8  (predict for NP_001185394.1)
other 8  (predict for NP_177524.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
BEE3
ath-r.7
for
BEE3
ath-m.9
for
BEE3
ath-e.2
for
BEE3
ath-m.4.bio
for
BEE3
ath-m.4.hor
for
BEE3
ath-m.4.lig
for
BEE3
ath-m.4.str
for
BEE3
ath-m.4.tis
for
BEE3
ath-u.5
for
BEE1
vvi-u.5
for
100247374
ppo-u.5
for
7493520
mtr-u.5
for
11438389
sly-u.5
for
101257639


Ortholog ID: 5619
Species ath ath bra ghi cit vvi ppo mtr sly sot sot nta nta
Symbol BEE1 BEE3 LOC103831859 LOC121220966 LOC102630474 LOC100247374 LOC7493520 LOC11438389 LOC101257639 LOC102591506 LOC102581324 LOC107760392 LOC107806000
Function* BR enhanced expression 1 BR enhanced expression 3 transcription factor BEE 3 transcription factor BEE 3 transcription factor BEE 3 transcription factor BEE 3 transcription factor BEE 3 transcription factor BEE 3 transcription factor BEE 1-like transcription factor BEE 3 transcription factor BEE 1-like transcription factor BEE 1 transcription factor BEE 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 4
bra04016 MAPK signaling pathway - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 4
cit01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00040 Pentose and glucuronate interconversions 4
vvi04016 MAPK signaling pathway - plant 3
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04016 MAPK signaling pathway - plant 3
ppo04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 3
mtr04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 7
sly04016 MAPK signaling pathway - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 8
sot04075 Plant hormone signal transduction 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 3
nta04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 9
nta04075 Plant hormone signal transduction 8
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838421 843719 103831859 121220966 102630474 100247374 7493520 11438389 101257639 102591506 102581324 107760392 107806000
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