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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   LpxC1   UDP-3-O-acyl N-acetylglycosamine deacetylase family protein 
 ath-r.7   LpxC1   UDP-3-O-acyl N-acetylglycosamine deacetylase family protein 
 ath-e.2   LpxC1   UDP-3-O-acyl N-acetylglycosamine deacetylase family protein 
 ath-u.5   LpxC3   UDP-3-O-acyl N-acetylglycosamine deacetylase family protein 
 ath-u.5   LpxC5   UDP-3-O-acyl N-acetylglycosamine deacetylase family protein 
 ath-u.5   LpxC4   UDP-3-O-acyl N-acetylglycosamine deacetylase family protein 
 bra-r.6   103835438   probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial 
 bna-r.1   111199800   probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial 
 bna-r.1   106361940   probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial 
 ghi-r.1   107915281   probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial 
 ghi-r.1   107909287   probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial 
 cit-r.1   102629631   probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial 
 gma-u.5   100814465   probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial 
 vvi-u.5   100266270   probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial 
 ppo-u.5   7462673   probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial 
 mtr-u.5   25482546   probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial 
 sly-u.5   101261245   probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial 
 sot-r.1   102586771   probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 
 nta-r.1   107824792   putative UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial 
 nta-r.1   107782186   putative UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial 
 nta-r.1   142181243   putative UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial 
 osa-u.5   4332110   probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial 
 zma-u.5   103644520   probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial 
 tae-r.2   123098197   probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial 
 tae-r.2   123085128   probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial 
 tae-r.2   123092919   probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial 
 hvu-r.1   123449271   probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial 
 sbi-r.1   8085274   probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 2 
 bdi-r.1   100840183   probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 2, mitochondrial 
 cre-r.1   CHLRE_16g653350v5   uncharacterized protein 

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Top 50 coexpressed genes to LpxC1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to LpxC1 (ath-u.5 coexpression data)

CoexMap"839084"


athLpxC1 | Entrez gene ID : 839084    
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 6 1 2 2 1 1 1 1 1 1 1 3 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00540 [list] [network] Lipopolysaccharide biosynthesis (10 genes)
GO BP
GO:2001289 [list] [network] lipid X metabolic process  (10 genes)  IMP  
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO MF
GO:0103117 [list] [network] UDP-3-O-acyl-N-acetylglucosamine deacetylase activity  (5 genes)  IMP  
Protein NP_001319076.1 [sequence] [blastp]
NP_173874.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  chlo_mito 5,  mito 4  (predict for NP_001319076.1)
chlo 9,  chlo_mito 5  (predict for NP_173874.2)
Subcellular
localization
TargetP
mito 4  (predict for NP_001319076.1)
mito 4  (predict for NP_173874.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
LpxC1
ath-r.7
for
LpxC1
ath-e.2
for
LpxC1
ath-u.5
for
LpxC3
ath-u.5
for
LpxC5
ath-u.5
for
LpxC4
bra-r.6
for
103835438
bna-r.1
for
111199800
bna-r.1
for
106361940
ghi-r.1
for
107915281
ghi-r.1
for
107909287
cit-r.1
for
102629631
gma-u.5
for
100814465
vvi-u.5
for
100266270
ppo-u.5
for
7462673
mtr-u.5
for
25482546
sly-u.5
for
101261245
sot-r.1
for
102586771
nta-r.1
for
107824792
nta-r.1
for
107782186
nta-r.1
for
142181243
osa-u.5
for
4332110
zma-u.5
for
103644520
tae-r.2
for
123098197
tae-r.2
for
123085128
tae-r.2
for
123092919
hvu-r.1
for
123449271
sbi-r.1
for
8085274
bdi-r.1
for
100840183
cre-r.1
for
CHLRE_16g653350v5


Ortholog ID: 6713
Species ath ath ath bra bna bna ghi ghi ghi cit gma vvi ppo mtr sly sot nta nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LpxC1 LpxC3 LpxC5 LOC103835438 LOC111199800 LOC106361940 LOC107915281 LOC107920734 LOC107915356 LOC102629631 LOC100814465 LOC100266270 LOC7462673 LOC25482546 LOC101261245 LOC102586771 LOC107824792 LOC107782186 LOC142181243 LOC4332110 LOC103644520 LOC123098197 LOC123085128 LOC123092919 LOC123449271 LOC8085274 LOC100840183 CHLRE_16g653350v5
Function* UDP-3-O-acyl N-acetylglycosamine deacetylase family protein UDP-3-O-acyl N-acetylglycosamine deacetylase family protein UDP-3-O-acyl N-acetylglycosamine deacetylase family protein probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial mitochondrial pyruvate carrier 3 probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 putative UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial putative UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial putative UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 2 probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 2, mitochondrial uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00540 Lipopolysaccharide biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00540 Lipopolysaccharide biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00540 Lipopolysaccharide biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
bna00540 Lipopolysaccharide biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 5
bna03040 Spliceosome 2
bna00540 Lipopolysaccharide biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00540 Lipopolysaccharide biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00540 Lipopolysaccharide biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00540 Lipopolysaccharide biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 3
sot03013 Nucleocytoplasmic transport 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 6
nta00540 Lipopolysaccharide biosynthesis 3
nta00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 4
nta03040 Spliceosome 3
nta04120 Ubiquitin mediated proteolysis 3
nta00540 Lipopolysaccharide biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00540 Lipopolysaccharide biosynthesis 3
nta00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 3
osa00640 Propanoate metabolism 2
osa00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 3
zma03013 Nucleocytoplasmic transport 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
tae03083 Polycomb repressive complex 3
tae04712 Circadian rhythm - plant 3
tae00540 Lipopolysaccharide biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00540 Lipopolysaccharide biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae03010 Ribosome 3
tae04517 IgSF CAM signaling 3
tae04814 Motor proteins 3
tae00540 Lipopolysaccharide biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00240 Pyrimidine metabolism 2
cre01240 Biosynthesis of cofactors 2
cre03008 Ribosome biogenesis in eukaryotes 2
cre00230 Purine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839084 839094 839102 103835438 111199800 106361940 107915281 107920734 107915356 102629631 100814465 100266270 7462673 25482546 101261245 102586771 107824792 107782186 142181243 4332110 103644520 123098197 123085128 123092919 123449271 8085274 100840183 5723773
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