ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	LpxC3	UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
ath-r.7	LpxC3	UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
ath-e.2	LpxC3	UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
ath-u.5	LpxC1	UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
ath-u.5	LpxC5	UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
ath-u.5	LpxC4	UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
bra-r.6	103835438	probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial
bna-r.1	111199800	probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial
bna-r.1	106361940	probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial
ghi-r.1	107915281	probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial
ghi-r.1	107909287	probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial
cit-r.1	102629631	probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial
gma-u.5	100814465	probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial
vvi-u.5	100266270	probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial
ppo-u.5	7462673	probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial
mtr-u.5	25482546	probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial
sly-u.5	101261245	probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial
sot-r.1	102586771	probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2
nta-r.1	107824792	putative UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial
nta-r.1	107782186	putative UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial
nta-r.1	142181243	putative UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial
osa-u.5	4332110	probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial
zma-u.5	103644520	probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial
tae-r.2	123098197	probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial
tae-r.2	123085128	probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial
tae-r.2	123092919	probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial
hvu-r.1	123449271	probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial
sbi-r.1	8085274	probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 2
bdi-r.1	100840183	probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 2, mitochondrial
cre-r.1	CHLRE_16g653350v5	uncharacterized protein

Top 50 coexpressed genes to LpxC3 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to LpxC3 (ath-u.5 coexpression data)

CoexMap"839094"

[Cytoscape]

Annotation

functional annotation

KEGG

ath00540 [list] [network] Lipopolysaccharide biosynthesis (10 genes)

GO BP

GO:2001289 [list] [network] lipid X metabolic process

(10 genes)

IMP

GO CC

GO:0005739 [list] [network] mitochondrion	(4244 genes)	IDA
GO:0009507 [list] [network] chloroplast	(5014 genes)	ISM

GO MF

GO:0103117 [list] [network] UDP-3-O-acyl-N-acetylglucosamine deacetylase activity

(5 genes)

IEA IMP

Protein

NP_001117349.4 [sequence] [blastp]

Subcellular
localization
wolf

chlo 9, chlo_mito 5

(predict for NP_001117349.4)

Subcellular
localization
TargetP

mito 4

(predict for NP_001117349.4)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for LpxC3	ath-r.7 for LpxC3	ath-e.2 for LpxC3	ath-u.5 for LpxC1	ath-u.5 for LpxC5	ath-u.5 for LpxC4	bra-r.6 for 103835438	bna-r.1 for 111199800	bna-r.1 for 106361940	ghi-r.1 for 107915281	ghi-r.1 for 107909287	cit-r.1 for 102629631	gma-u.5 for 100814465	vvi-u.5 for 100266270	ppo-u.5 for 7462673	mtr-u.5 for 25482546	sly-u.5 for 101261245	sot-r.1 for 102586771	nta-r.1 for 107824792	nta-r.1 for 107782186	nta-r.1 for 142181243	osa-u.5 for 4332110	zma-u.5 for 103644520	tae-r.2 for 123098197	tae-r.2 for 123085128	tae-r.2 for 123092919	hvu-r.1 for 123449271	sbi-r.1 for 8085274	bdi-r.1 for 100840183	cre-r.1 for CHLRE_16g653350v5

Ortholog

Ortholog ID: 6713

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

LpxC3

LpxC1

LpxC5

Function^*

UDP-3-O-acyl N-acetylglycosamine deacetylase family protein

probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial

mitochondrial pyruvate carrier 3

probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial

probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2

putative UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial

probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial

probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 2

probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 2, mitochondrial

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00540	Lipopolysaccharide biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00540	Lipopolysaccharide biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00540	Lipopolysaccharide biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	2
bna00540	Lipopolysaccharide biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	5
bna03040	Spliceosome	2
bna00540	Lipopolysaccharide biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00540	Lipopolysaccharide biosynthesis	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00540	Lipopolysaccharide biosynthesis	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00540	Lipopolysaccharide biosynthesis	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	3
sot03013	Nucleocytoplasmic transport	2
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00970	Aminoacyl-tRNA biosynthesis	6
nta00540	Lipopolysaccharide biosynthesis	3
nta00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00970	Aminoacyl-tRNA biosynthesis	4
nta03040	Spliceosome	3
nta04120	Ubiquitin mediated proteolysis	3
nta00540	Lipopolysaccharide biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00540	Lipopolysaccharide biosynthesis	3
nta00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	3
osa00640	Propanoate metabolism	2
osa00280	Valine, leucine and isoleucine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	3
zma03013	Nucleocytoplasmic transport	2
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	3
tae03083	Polycomb repressive complex	3
tae04712	Circadian rhythm - plant	3
tae00540	Lipopolysaccharide biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00540	Lipopolysaccharide biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	4
tae03010	Ribosome	3
tae04517	IgSF CAM signaling	3
tae04814	Motor proteins	3
tae00540	Lipopolysaccharide biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00240	Pyrimidine metabolism	2
cre01240	Biosynthesis of cofactors	2
cre03008	Ribosome biogenesis in eukaryotes	2
cre00230	Purine metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

839094

839084

839102

103835438

111199800

106361940

107915281

107920734

107915356

102629631

100814465

100266270

7462673

25482546

101261245

102586771

107824792

107782186

142181243

4332110

103644520

123098197

123085128

123092919

123449271

8085274

100840183

5723773

The preparation time of this page was 0.1 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	6	1	2	2	1	1	1	1	1	1	1	3	1	1	3	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to LpxC3 (ath-u.5 coexpression data)

Top 50 enrichment test to LpxC3 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**