ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	AT1G48090	calcium-dependent lipid-binding family protein
ath-r.7	AT1G48090	calcium-dependent lipid-binding family protein
ath-m.9	AT1G48090	calcium-dependent lipid-binding family protein
ath-e.2	AT1G48090	calcium-dependent lipid-binding family protein
ath-m.4.bio	AT1G48090	calcium-dependent lipid-binding family protein
ath-m.4.hor	AT1G48090	calcium-dependent lipid-binding family protein
ath-m.4.lig	AT1G48090	calcium-dependent lipid-binding family protein
ath-m.4.str	AT1G48090	calcium-dependent lipid-binding family protein
ath-m.4.tis	AT1G48090	calcium-dependent lipid-binding family protein
ath-u.5	AT4G17140	pleckstrin homology (PH) domain-containing protein
bra-r.6	103871499	uncharacterized LOC103871499
bra-r.6	103833252	uncharacterized LOC103833252
bra-r.6	103833994	uncharacterized LOC103833994
bna-r.1	106433153	intermembrane lipid transfer protein vps13A-like
bna-r.1	106349747	uncharacterized LOC106349747
bna-r.1	106360702	uncharacterized LOC106360702
ghi-r.1	107910550	uncharacterized LOC107910550
ghi-r.1	107916244	uncharacterized LOC107916244
ghi-r.1	107896585	uncharacterized LOC107896585
cit-r.1	102618522	uncharacterized LOC102618522
cit-r.1	102625672	uncharacterized LOC102625672
gma-u.5	100780088	uncharacterized LOC100780088
gma-u.5	100782481	uncharacterized LOC100782481
vvi-u.5	100260794	uncharacterized LOC100260794
vvi-u.5	100258011	uncharacterized LOC100258011
ppo-u.5	7498234	uncharacterized LOC7498234
ppo-u.5	7475694	uncharacterized LOC7475694
mtr-u.5	25494140	uncharacterized LOC25494140
mtr-u.5	11426962	uncharacterized LOC11426962
sly-u.5	101262246	uncharacterized LOC101262246
sly-u.5	101254928	uncharacterized LOC101254928
sot-r.1	102583893	uncharacterized LOC102583893
sot-r.1	102586877	uncharacterized LOC102586877
nta-r.1	107782497	uncharacterized LOC107782497
nta-r.1	107790661	uncharacterized LOC107790661
nta-r.1	107795012	uncharacterized LOC107795012
osa-u.5	4329342	uncharacterized LOC4329342
osa-u.5	4349418	uncharacterized LOC4349418
zma-u.5	103638912	uncharacterized LOC103638912
zma-u.5	103654673	uncharacterized LOC103654673
tae-r.2	123128156	uncharacterized LOC123128156
tae-r.2	123137134	uncharacterized LOC123137134
tae-r.2	123181645	uncharacterized LOC123181645
hvu-r.1	123439026	uncharacterized LOC123439026
hvu-r.1	123406267	uncharacterized LOC123406267
sbi-r.1	8058057	uncharacterized LOC8058057
sbi-r.1	8056654	uncharacterized LOC8056654
bdi-r.1	100839715	uncharacterized LOC100839715
bdi-r.1	104584266	uncharacterized LOC104584266
bdi-r.1	100837501	uncharacterized LOC100837501
cre-r.1	CHLRE_12g483500v5	uncharacterized protein
cre-r.1	CHLRE_17g728250v5	uncharacterized protein

Top 50 coexpressed genes to AT1G48090 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT1G48090 (ath-u.5 coexpression data)

CoexMap"841226"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0019722 [list] [network] calcium-mediated signaling	(83 genes)	IDA
GO:0007165 [list] [network] signal transduction	(1102 genes)	ISS

GO CC

GO:0099503 [list] [network] secretory vesicle	(172 genes)	IDA
GO:0031982 [list] [network] vesicle	(608 genes)	IDA
GO:0009506 [list] [network] plasmodesma	(874 genes)	HDA
GO:0005634 [list] [network] nucleus	(10367 genes)	HDA

GO MF

GO:0035091 [list] [network] phosphatidylinositol binding

(93 genes)

ISS

Protein

NP_001320405.1 [sequence] [blastp]
NP_001320406.1 [sequence] [blastp]
NP_001320407.1 [sequence] [blastp]
NP_001320408.1 [sequence] [blastp]
NP_001320409.1 [sequence] [blastp]
NP_175242.7 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, chlo 2, cyto 1, cysk 1, plas 1, chlo_mito 1, golg_plas 1	(predict for NP_001320405.1)
nucl 4, chlo 2, cyto 1, cysk 1, plas 1, chlo_mito 1, golg_plas 1	(predict for NP_001320406.1)
nucl 4, chlo 2, cyto 1, cysk 1, plas 1, chlo_mito 1, golg_plas 1	(predict for NP_001320407.1)
nucl 4, chlo 2, cyto 1, cysk 1, plas 1, chlo_mito 1, golg_plas 1	(predict for NP_001320408.1)
chlo 3, nucl 2, cyto 2, cyto_nucl 2	(predict for NP_001320409.1)
chlo 4, nucl 2, chlo_mito 2, cyto 1, plas 1, cysk_nucl 1, cyto_plas 1	(predict for NP_175242.7)

Subcellular
localization
TargetP

other 6, mito 3	(predict for NP_001320405.1)
other 6, mito 3	(predict for NP_001320406.1)
other 6, mito 3	(predict for NP_001320407.1)
other 6, mito 3	(predict for NP_001320408.1)
scret 8	(predict for NP_001320409.1)
scret 8	(predict for NP_175242.7)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT1G48090	ath-r.7 for AT1G48090	ath-m.9 for AT1G48090	ath-e.2 for AT1G48090	ath-m.4.bio for AT1G48090	ath-m.4.hor for AT1G48090	ath-m.4.lig for AT1G48090	ath-m.4.str for AT1G48090	ath-m.4.tis for AT1G48090	ath-u.5 for AT4G17140	bra-r.6 for 103871499	bra-r.6 for 103833252	bra-r.6 for 103833994	bna-r.1 for 106433153	bna-r.1 for 106349747	bna-r.1 for 106360702	ghi-r.1 for 107910550	ghi-r.1 for 107916244	ghi-r.1 for 107896585	cit-r.1 for 102618522	cit-r.1 for 102625672	gma-u.5 for 100780088	gma-u.5 for 100782481	vvi-u.5 for 100260794	vvi-u.5 for 100258011	ppo-u.5 for 7498234	ppo-u.5 for 7475694	mtr-u.5 for 25494140	mtr-u.5 for 11426962	sly-u.5 for 101262246	sly-u.5 for 101254928	sot-r.1 for 102583893	sot-r.1 for 102586877	nta-r.1 for 107782497	nta-r.1 for 107790661	nta-r.1 for 107795012	osa-u.5 for 4329342	osa-u.5 for 4349418	zma-u.5 for 103638912	zma-u.5 for 103654673	tae-r.2 for 123128156	tae-r.2 for 123137134	tae-r.2 for 123181645	hvu-r.1 for 123439026	hvu-r.1 for 123406267	sbi-r.1 for 8058057	sbi-r.1 for 8056654	bdi-r.1 for 100839715	bdi-r.1 for 104584266	bdi-r.1 for 100837501	cre-r.1 for CHLRE_12g483500v5	cre-r.1 for CHLRE_17g728250v5

Ortholog

Ortholog ID: 2487

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

calcium-dependent lipid-binding family protein

pleckstrin homology (PH) domain-containing protein

uncharacterized LOC103871499

uncharacterized LOC103833994

intermembrane lipid transfer protein vps13A-like

uncharacterized LOC106360702

uncharacterized LOC106444897

uncharacterized LOC107896585

uncharacterized LOC107933727

uncharacterized LOC107886399

uncharacterized LOC102618522

uncharacterized LOC102625672

uncharacterized LOC100780088

uncharacterized LOC100782481

uncharacterized LOC100260794

uncharacterized LOC100258011

uncharacterized LOC7498234

uncharacterized LOC7475694

uncharacterized LOC25494140

uncharacterized LOC11426962

uncharacterized LOC101262246

uncharacterized LOC101254928

uncharacterized LOC102583893

uncharacterized LOC102586877

uncharacterized LOC107790661

uncharacterized LOC107795012

uncharacterized LOC107798809

uncharacterized LOC4329342

uncharacterized LOC4349418

uncharacterized LOC103638912

uncharacterized LOC103654673

uncharacterized LOC123181645

uncharacterized LOC123144534

uncharacterized LOC123052093

uncharacterized LOC123439026

uncharacterized LOC123406267

uncharacterized LOC8058057

uncharacterized LOC8056654

uncharacterized LOC100839715

uncharacterized LOC104584266

uncharacterized LOC100837501

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2
ath03082	ATP-dependent chromatin remodeling	2
ath04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	4
bra03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	3
bra03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	4
bna03015	mRNA surveillance pathway	2
bna03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2
ghi00240	Pyrimidine metabolism	2
ghi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2
ghi00240	Pyrimidine metabolism	2
ghi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	4
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	2
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03082	ATP-dependent chromatin remodeling	2
vvi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03082	ATP-dependent chromatin remodeling	2
vvi04120	Ubiquitin mediated proteolysis	2
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	5
mtr03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03082	ATP-dependent chromatin remodeling	2
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03082	ATP-dependent chromatin remodeling	2
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03082	ATP-dependent chromatin remodeling	2
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	2
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	2
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03018	RNA degradation	2
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04148	Efferocytosis	3
tae03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04136	Autophagy - other	2
tae04518	Integrin signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	3
hvu03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00500	Starch and sucrose metabolism	3
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04142	Lysosome	2
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	2
bdi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04814	Motor proteins	6

Expression

Expression pattern

Entrez Gene ID^*

841226

827424

103871499

103833994

106433153

106360702

106444897

107896585

107933727

107886399

102618522

102625672

100780088

100782481

100260794

100258011

7498234

7475694

25494140

11426962

101262246

101254928

102583893

102586877

107790661

107795012

107798809

4329342

4349418

103638912

103654673

123181645

123144534

123052093

123439026

123406267

8058057

8056654

100839715

104584266

100837501

5728745

5722820

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Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	10	3	3	3	2	2	2	2	2	2	2	3	2	2	3	2	2	3	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT1G48090 (ath-u.5 coexpression data)

Top 50 enrichment test to AT1G48090 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**