ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	AT1G57860	Translation protein SH3-like family protein
ath-r.7	AT1G57860	Translation protein SH3-like family protein
ath-e.2	AT1G57860	Translation protein SH3-like family protein
ath-u.5	AT1G09590	Translation protein SH3-like family protein
ath-u.5	AT1G09690	Translation protein SH3-like family protein
ath-u.5	AT1G57660	Translation protein SH3-like family protein
gma-u.5	100500046	uncharacterized LOC100500046
gma-u.5	100305629	putative 60S ribosomal protein L21
vvi-u.5	100243484	large ribosomal subunit protein eL21z/eL21y
vvi-u.5	100262509	60S ribosomal protein L21-1-like
vvi-u.5	100241755	large ribosomal subunit protein eL21z/eL21y
ppo-u.5	7496511	60S ribosomal protein L21-1
ppo-u.5	7469902	60S ribosomal protein L21-1
ppo-u.5	7467867	60S ribosomal protein L21-1
mtr-u.5	25499569	60S ribosomal protein L21-1
mtr-u.5	25484261	60S ribosomal protein L21-1
sly-u.5	101257121	large ribosomal subunit protein eL21x/eL21w
sly-u.5	101265689	large ribosomal subunit protein eL21z/eL21y
osa-u.5	9266412	large ribosomal subunit protein eL21x/eL21w
osa-u.5	4348839	large ribosomal subunit protein eL21x/eL21w
zma-u.5	100192855	60S ribosomal protein L21-like
zma-u.5	100281780	60S ribosomal protein L21-like
zma-u.5	100194057	60S ribosomal protein L21-like

Top 50 coexpressed genes to AT1G57860 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT1G57860 (ath-u.5 coexpression data)

CoexMap"842161"

[Cytoscape]

Annotation

functional annotation

KEGG

ath03010 [list] [network] Ribosome (394 genes)

GO BP

GO:0006412 [list] [network] translation

(926 genes)

IEA

GO CC

GO:0022625 [list] [network] cytosolic large ribosomal subunit	(124 genes)	HDA
GO:0005634 [list] [network] nucleus	(10367 genes)	HDA
GO:0005737 [list] [network] cytoplasm	(14000 genes)	ISM

GO MF

Protein

NP_564726.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, nucl 2, chlo 1

(predict for NP_564726.1)

Subcellular
localization
TargetP

mito 8, other 4

(predict for NP_564726.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT1G57860	ath-r.7 for AT1G57860	ath-e.2 for AT1G57860	ath-u.5 for AT1G09590	ath-u.5 for AT1G09690	ath-u.5 for AT1G57660	gma-u.5 for 100500046	gma-u.5 for 100305629	vvi-u.5 for 100243484	vvi-u.5 for 100262509	vvi-u.5 for 100241755	ppo-u.5 for 7496511	ppo-u.5 for 7469902	ppo-u.5 for 7467867	mtr-u.5 for 25499569	mtr-u.5 for 25484261	sly-u.5 for 101257121	sly-u.5 for 101265689	osa-u.5 for 9266412	osa-u.5 for 4348839	zma-u.5 for 100192855	zma-u.5 for 100281780	zma-u.5 for 100194057

Ortholog

Ortholog ID: 1641

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

Translation protein SH3-like family protein

60S ribosomal protein L21-1-like

60S ribosomal protein L21-1

60S ribosomal protein L21-2

uncharacterized LOC100500046

putative 60S ribosomal protein L21

large ribosomal subunit protein eL21z/eL21y

60S ribosomal protein L21-1

large ribosomal subunit protein eL21z/eL21y

large ribosomal subunit protein eL21x/eL21w

60S ribosomal protein L21-2

60S ribosomal protein L21-1-like

large ribosomal subunit protein eL21x/eL21w

large ribosomal subunit protein eL21z/eL21y-like

large ribosomal subunit protein eL21x/eL21w

60S ribosomal protein L21-like

60S ribosomal protein L21-1

60S ribosomal protein L21-2-like

60S ribosomal protein L21-1

60S ribosomal protein L21-2

60S ribosomal protein L21-1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	21
ath04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	21
ath04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	16
ghi04120	Ubiquitin mediated proteolysis	8
ghi03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	14
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	18
mtr04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	16
nta03018	RNA degradation	2
nta03040	Spliceosome	2
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	7
nta00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	20
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	20
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	10
tae00230	Purine metabolism	3
tae00240	Pyrimidine metabolism	3
tae01232	Nucleotide metabolism	3
tae01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	16
tae00230	Purine metabolism	3
tae00240	Pyrimidine metabolism	3
tae01232	Nucleotide metabolism	3
tae01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03010	Ribosome	18

Expression

Expression pattern

Entrez Gene ID^*

837486

837497

103843335

103843345

106402049

106362372

107922438

107891242

102615982

100500046

100305629

100243484

100241755

7496511

7469902

25499569

25484261

101265689

101257121

102598242

102599930

107791104

107796277

4348839

9266412

100194057

100192783

123120178

123044938

123449862

123430433

8059262

8080587

100828513

100836076

5723657

The preparation time of this page was 0.1 [sec].


Species	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	6	2	3	3	2	2	2	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT1G57860 (ath-u.5 coexpression data)

Top 50 enrichment test to AT1G57860 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**