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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   IMP4   Ribosomal RNA processing Brix domain protein 
 ath-r.7   IMP4   Ribosomal RNA processing Brix domain protein 
 ath-m.9   IMP4   Ribosomal RNA processing Brix domain protein 
 ath-e.2   IMP4   Ribosomal RNA processing Brix domain protein 
 ath-m.4.bio   IMP4   Ribosomal RNA processing Brix domain protein 
 ath-m.4.hor   IMP4   Ribosomal RNA processing Brix domain protein 
 ath-m.4.lig   IMP4   Ribosomal RNA processing Brix domain protein 
 ath-m.4.str   IMP4   Ribosomal RNA processing Brix domain protein 
 ath-m.4.tis   IMP4   Ribosomal RNA processing Brix domain protein 
 bra-r.6   103838098   U3 small nucleolar ribonucleoprotein protein IMP4 
 bna-r.1   106366504   U3 small nucleolar ribonucleoprotein protein IMP4-like 
 bna-r.1   106392202   U3 small nucleolar ribonucleoprotein protein IMP4-like 
 ghi-r.1   107962090   U3 small nucleolar ribonucleoprotein protein IMP4 
 ghi-r.1   107945650   U3 small nucleolar ribonucleoprotein protein IMP4 
 ghi-r.1   107900578   U3 small nucleolar ribonucleoprotein protein IMP4 
 cit-r.1   102623180   uncharacterized LOC102623180 
 gma-u.5   100814677   U3 small nucleolar ribonucleoprotein protein IMP4-like 
 gma-u.5   100803810   U3 small nucleolar ribonucleoprotein protein IMP4-like 
 vvi-u.5   100248284   uncharacterized LOC100248284 
 ppo-u.5   7496007   uncharacterized LOC7496007 
 ppo-u.5   7460224   uncharacterized LOC7460224 
 mtr-u.5   11422276   U3 small nucleolar ribonucleoprotein protein IMP4 
 sly-u.5   101261441   uncharacterized LOC101261441 
 sly-u.5   101253657   uncharacterized LOC101253657 
 sot-r.1   102582396   U3 small nucleolar ribonucleoprotein protein IMP4-like 
 nta-r.1   107786310   uncharacterized LOC107786310 
 nta-r.1   107775574   uncharacterized LOC107775574 
 nta-r.1   107775353   uncharacterized LOC107775353 
 osa-u.5   4344688   uncharacterized LOC4344688 
 zma-u.5   100216667   uncharacterized LOC100216667 
 tae-r.2   123147344   U3 small nucleolar ribonucleoprotein protein IMP4 
 tae-r.2   123159149   U3 small nucleolar ribonucleoprotein protein IMP4 
 tae-r.2   123166557   U3 small nucleolar ribonucleoprotein protein IMP4 
 hvu-r.1   123407047   U3 small nucleolar ribonucleoprotein protein IMP4 
 sbi-r.1   8065136   U3 small nucleolar ribonucleoprotein protein IMP4 
 sbi-r.1   8067854   U3 small nucleolar ribonucleoprotein protein IMP4 
 bdi-r.1   100841865   U3 small nucleolar ribonucleoprotein protein IMP4 
 cre-r.1   CHLRE_10g454100v5   uncharacterized protein 

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Top 50 coexpressed genes to IMP4 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to IMP4 (ath-u.5 coexpression data)

CoexMap"842682"


athIMP4 | Entrez gene ID : 842682      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 3 1 2 1 2 1 2 1 3 1 1 3 1 2 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03008 [list] [network] Ribosome biogenesis in eukaryotes (98 genes)
GO BP
GO:0006364 [list] [network] rRNA processing  (183 genes)  TAS  
GO CC
GO:0016363 [list] [network] nuclear matrix  (3 genes)  IDA  
GO:0015030 [list] [network] Cajal body  (12 genes)  TAS  
GO:0005732 [list] [network] sno(s)RNA-containing ribonucleoprotein complex  (72 genes)  TAS  
GO:0005730 [list] [network] nucleolus  (394 genes)  TAS  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0042134 [list] [network] rRNA primary transcript binding  (3 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_176564.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 2,  cysk_nucl 2,  cyto 1,  chlo_mito 1  (predict for NP_176564.1)
Subcellular
localization
TargetP
mito 7,  other 5  (predict for NP_176564.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
IMP4
ath-r.7
for
IMP4
ath-m.9
for
IMP4
ath-e.2
for
IMP4
ath-m.4.bio
for
IMP4
ath-m.4.hor
for
IMP4
ath-m.4.lig
for
IMP4
ath-m.4.str
for
IMP4
ath-m.4.tis
for
IMP4
bra-r.6
for
103838098
bna-r.1
for
106366504
bna-r.1
for
106392202
ghi-r.1
for
107962090
ghi-r.1
for
107945650
ghi-r.1
for
107900578
cit-r.1
for
102623180
gma-u.5
for
100814677
gma-u.5
for
100803810
vvi-u.5
for
100248284
ppo-u.5
for
7496007
ppo-u.5
for
7460224
mtr-u.5
for
11422276
sly-u.5
for
101261441
sly-u.5
for
101253657
sot-r.1
for
102582396
nta-r.1
for
107786310
nta-r.1
for
107775574
nta-r.1
for
107775353
osa-u.5
for
4344688
zma-u.5
for
100216667
tae-r.2
for
123147344
tae-r.2
for
123159149
tae-r.2
for
123166557
hvu-r.1
for
123407047
sbi-r.1
for
8065136
sbi-r.1
for
8067854
bdi-r.1
for
100841865
cre-r.1
for
CHLRE_10g454100v5


Ortholog ID: 7453
Species ath bra bna bna ghi ghi ghi cit gma gma vvi ppo ppo mtr sly sly sot nta nta nta osa zma tae tae tae hvu sbi sbi bdi cre
Symbol IMP4 LOC103838098 LOC106366504 LOC106392202 LOC107962090 LOC107945650 LOC107900578 LOC102623180 LOC100814677 LOC100803810 LOC100248284 LOC7496007 LOC7460224 LOC11422276 LOC101261441 LOC101253657 LOC102582396 LOC107786310 LOC107775574 LOC107775353 LOC4344688 LOC100216667 LOC123147344 LOC123159149 LOC123166557 LOC123407047 LOC8065136 LOC8067854 LOC100841865 CHLRE_10g454100v5
Function* Ribosomal RNA processing Brix domain protein U3 small nucleolar ribonucleoprotein protein IMP4 U3 small nucleolar ribonucleoprotein protein IMP4-like U3 small nucleolar ribonucleoprotein protein IMP4-like U3 small nucleolar ribonucleoprotein protein IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 uncharacterized LOC102623180 U3 small nucleolar ribonucleoprotein protein IMP4-like U3 small nucleolar ribonucleoprotein protein IMP4-like uncharacterized LOC100248284 uncharacterized LOC7496007 uncharacterized LOC7460224 U3 small nucleolar ribonucleoprotein protein IMP4 uncharacterized LOC101261441 uncharacterized LOC101253657 U3 small nucleolar ribonucleoprotein protein IMP4-like uncharacterized LOC107786310 uncharacterized LOC107775574 uncharacterized LOC107775353 uncharacterized LOC4344688 uncharacterized LOC100216667 U3 small nucleolar ribonucleoprotein protein IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 5
ath03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi00230 Purine metabolism 2
ghi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi00230 Purine metabolism 2
ghi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi00230 Purine metabolism 2
ghi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 4
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 6
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 2
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
sbi03008 Ribosome biogenesis in eukaryotes 3
sbi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 10
bdi03020 RNA polymerase 2
bdi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 7
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842682 103838098 106366504 106392202 107962090 107945650 107900578 102623180 100814677 100803810 100248284 7496007 7460224 11422276 101261441 101253657 102582396 107786310 107775574 107775353 4344688 100216667 123147344 123159149 123166557 123407047 8065136 8067854 100841865 5723909
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