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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   SHW1   short hypocotyl in white light1 
 ath-r.7   SHW1   short hypocotyl in white light1 
 ath-m.9   SHW1   short hypocotyl in white light1 
 ath-e.2   SHW1   short hypocotyl in white light1 
 ath-m.4.bio   SHW1   short hypocotyl in white light1 
 ath-m.4.hor   SHW1   short hypocotyl in white light1 
 ath-m.4.lig   SHW1   short hypocotyl in white light1 
 ath-m.4.str   SHW1   short hypocotyl in white light1 
 ath-m.4.tis   SHW1   short hypocotyl in white light1 
 ath-u.5   AT4G33780   ATP phosphoribosyltransferase regulatory subunit 
 bra-r.6   103831542   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 bra-r.6   103862302   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 bna-r.1   125590169   protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like 
 bna-r.1   BNAA03G50640D   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 bna-r.1   106438555   protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like 
 ghi-r.1   107948971   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 ghi-r.1   107899604   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 ghi-r.1   107886967   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 cit-r.1   102627180   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 cit-r.1   102621139   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 gma-u.5   100817442   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 gma-u.5   100784688   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 gma-u.5   100785194   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 vvi-u.5   100251465   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 vvi-u.5   100243345   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 ppo-u.5   7478675   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 mtr-u.5   11408848   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 sly-u.5   101260181   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 sly-u.5   101257460   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 sot-r.1   102605954   uncharacterized LOC102605954 
 sot-r.1   102596298   uncharacterized LOC102596298 
 nta-r.1   107803764   uncharacterized LOC107803764 
 nta-r.1   107781353   uncharacterized LOC107781353 
 nta-r.1   107776742   uncharacterized LOC107776742 
 osa-u.5   4332154   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 zma-u.5   100275676   uncharacterized LOC100275676 
 tae-r.2   123085105   uncharacterized LOC123085105 
 tae-r.2   123092892   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 tae-r.2   123098171   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 hvu-r.1   123449245   protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like 
 sbi-r.1   8085251   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 bdi-r.1   100840559   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 

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Top 50 coexpressed genes to SHW1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SHW1 (ath-u.5 coexpression data)

CoexMap"843330"


athSHW1 | Entrez gene ID : 843330      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 2 3 3 2 3 2 1 1 2 2 3 1 1 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0090227 [list] [network] regulation of red or far-red light signaling pathway  (3 genes)  IMP  
GO:1901333 [list] [network] positive regulation of lateral root development  (4 genes)  IMP  
GO:0048578 [list] [network] positive regulation of long-day photoperiodism, flowering  (11 genes)  IMP  
GO:0010100 [list] [network] negative regulation of photomorphogenesis  (16 genes)  IEA IMP  
GO:0031540 [list] [network] regulation of anthocyanin biosynthetic process  (18 genes)  IMP  
GO:0010380 [list] [network] regulation of chlorophyll biosynthetic process  (26 genes)  IMP  
GO:0009958 [list] [network] positive gravitropism  (41 genes)  IMP  
GO:0009787 [list] [network] regulation of abscisic acid-activated signaling pathway  (135 genes)  IEA IMP  
GO:0009642 [list] [network] response to light intensity  (168 genes)  IMP  
GO:0009416 [list] [network] response to light stimulus  (776 genes)  IEP IMP  
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001322309.1 [sequence] [blastp]
NP_564981.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 4,  chlo 4,  nucl 1,  plas 1,  golg 1,  nucl_plas 1,  golg_plas 1  (predict for NP_001322309.1)
chlo 6,  mito 4  (predict for NP_564981.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_001322309.1)
chlo 9  (predict for NP_564981.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
SHW1
ath-r.7
for
SHW1
ath-m.9
for
SHW1
ath-e.2
for
SHW1
ath-m.4.bio
for
SHW1
ath-m.4.hor
for
SHW1
ath-m.4.lig
for
SHW1
ath-m.4.str
for
SHW1
ath-m.4.tis
for
SHW1
ath-u.5
for
AT4G33780
bra-r.6
for
103831542
bra-r.6
for
103862302
bna-r.1
for
125590169
bna-r.1
for
BNAA03G50640D
bna-r.1
for
106438555
ghi-r.1
for
107948971
ghi-r.1
for
107899604
ghi-r.1
for
107886967
cit-r.1
for
102627180
cit-r.1
for
102621139
gma-u.5
for
100817442
gma-u.5
for
100784688
gma-u.5
for
100785194
vvi-u.5
for
100251465
vvi-u.5
for
100243345
ppo-u.5
for
7478675
mtr-u.5
for
11408848
sly-u.5
for
101260181
sly-u.5
for
101257460
sot-r.1
for
102605954
sot-r.1
for
102596298
nta-r.1
for
107803764
nta-r.1
for
107781353
nta-r.1
for
107776742
osa-u.5
for
4332154
zma-u.5
for
100275676
tae-r.2
for
123085105
tae-r.2
for
123092892
tae-r.2
for
123098171
hvu-r.1
for
123449245
sbi-r.1
for
8085251
bdi-r.1
for
100840559


Ortholog ID: 4426
Species ath ath bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi vvi ppo mtr sly sly sot sot nta nta nta osa zma tae tae tae hvu sbi bdi
Symbol SHW1 AT4G33780 LOC103831542 LOC103862302 LOC125590169 LOC106380947 LOC106375713 LOC107948971 LOC107886967 LOC121222071 LOC102627180 LOC102621139 LOC100817442 LOC100784688 LOC100785194 LOC100251465 LOC100243345 LOC7478675 LOC11408848 LOC101260181 LOC101257460 LOC102605954 LOC102596298 LOC107803764 LOC107776742 LOC107793754 LOC4332154 LOC100275676 LOC123085105 LOC123092892 LOC123098171 LOC123449245 LOC8085251 LOC100840559
Function* short hypocotyl in white light1 ATP phosphoribosyltransferase regulatory subunit protein SHORT HYPOCOTYL IN WHITE LIGHT 1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like uncharacterized LOC106380947 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like protein SHORT HYPOCOTYL IN WHITE LIGHT 1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 uncharacterized LOC102605954 uncharacterized LOC102596298 uncharacterized LOC107803764 uncharacterized LOC107776742 uncharacterized LOC107793754 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 uncharacterized LOC100275676 uncharacterized LOC123085105 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like protein SHORT HYPOCOTYL IN WHITE LIGHT 1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00190 Oxidative phosphorylation 3
ath00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03083 Polycomb repressive complex 4
bra04120 Ubiquitin mediated proteolysis 4
bra04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00562 Inositol phosphate metabolism 2
bna04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 8
bna01240 Biosynthesis of cofactors 8
bna03010 Ribosome 6
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 3
ghi00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 3
cit01200 Carbon metabolism 3
cit00270 Cysteine and methionine metabolism 2
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 13
vvi00020 Citrate cycle (TCA cycle) 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 6
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00541 Biosynthesis of various nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03022 Basal transcription factors 2
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
tae04382 Cornified envelope formation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00785 Lipoic acid metabolism 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00710 Carbon fixation by Calvin cycle 2
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03060 Protein export 2
bdi04145 Phagosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843330 829520 103831542 103862302 125590169 106380947 106375713 107948971 107886967 121222071 102627180 102621139 100817442 100784688 100785194 100251465 100243345 7478675 11408848 101260181 101257460 102605954 102596298 107803764 107776742 107793754 4332154 100275676 123085105 123092892 123098171 123449245 8085251 100840559
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