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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   TPR1   TOPLESS-related 1 
 ath-r.7   TPR1   TOPLESS-related 1 
 ath-e.2   TPR1   TOPLESS-related 1 
 ath-u.5   WSIP2   WUS-interacting protein 2 
 ath-u.5   TPR2   TOPLESS-related 2 
 ath-u.5   TPR3   TOPLESS-related 3 
 gma-u.5   100793575   topless-related protein 3 
 gma-u.5   100808421   topless-related protein 3 
 gma-u.5   100805156   topless-related protein 4 
 vvi-u.5   100254390   topless-related protein 1 
 vvi-u.5   100244059   topless-related protein 4 
 vvi-u.5   100247343   topless-related protein 4 
 ppo-u.5   7459881   topless-related protein 4 
 ppo-u.5   7489126   topless-related protein 1 
 ppo-u.5   7489125   topless-related protein 1 
 mtr-u.5   11405937   topless-related protein 3 
 mtr-u.5   11415137   topless-related protein 2 
 sly-u.5   104646571   protein TOPLESS 
 sly-u.5   101244499   topless-related protein 4-like 
 sly-u.5   101248801   topless-related protein 1-like 
 osa-u.5   TPR3   protein TPR3-like 
 osa-u.5   4344728   protein TOPLESS-RELATED PROTEIN 2-like 
 osa-u.5   4327709   protein TPR1-like 
 zma-u.5   100276114   topless-related2 
 zma-u.5   103634695   protein TPR1 
 zma-u.5   100381576   uncharacterized LOC100381576 

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Top 50 coexpressed genes to TPR1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to TPR1 (ath-u.5 coexpression data)

CoexMap"844388"


athTPR1 | Entrez gene ID : 844388      
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 6 3 3 3 2 3 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010072 [list] [network] primary shoot apical meristem specification  (15 genes)  IGI  
GO CC
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001319429.1 [sequence] [blastp]
NP_178164.3 [sequence] [blastp]
NP_849913.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 4,  cyto 1,  vacu 1,  cyto_pero 1,  cysk_plas 1,  cyto_E.R. 1  (predict for NP_001319429.1)
chlo 4,  nucl 4,  cyto 1,  vacu 1,  cyto_pero 1,  cysk_plas 1,  cyto_E.R. 1  (predict for NP_178164.3)
chlo 4,  nucl 4,  cyto 1,  vacu 1,  cyto_pero 1,  cysk_plas 1,  cyto_E.R. 1  (predict for NP_849913.2)
Subcellular
localization
TargetP
scret 5,  other 4  (predict for NP_001319429.1)
scret 5,  other 4  (predict for NP_178164.3)
scret 5,  other 4  (predict for NP_849913.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
TPR1

.
ath-r.7
for
TPR1

.
ath-e.2
for
TPR1

.
ath-u.5
for
WSIP2

.
ath-u.5
for
TPR2

.
ath-u.5
for
TPR3

.
gma-u.5
for
100793575

.
gma-u.5
for
100808421

.
gma-u.5
for
100805156

.
vvi-u.5
for
100254390

.
vvi-u.5
for
100244059

.
vvi-u.5
for
100247343

.
ppo-u.5
for
7459881

.
ppo-u.5
for
7489126

.
ppo-u.5
for
7489125

.
mtr-u.5
for
11405937

.
mtr-u.5
for
11415137

.
sly-u.5
for
104646571

.
sly-u.5
for
101244499

.
sly-u.5
for
101248801

.
osa-u.5
for
TPR3

.
osa-u.5
for
4344728

.
osa-u.5
for
4327709

.
zma-u.5
for
100276114

.
zma-u.5
for
103634695

.
zma-u.5
for
100381576

.


Ortholog ID: 377
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna bna sbi sbi sot sot cit cit bdi bdi nta nta
Symbol TPL WSIP2 LOC100800771 LOC100790282 LOC101248801 LOC101244499 LOC4327709 LOC4344728 LOC103634695 LOC100193888 LOC103869731 LOC103842887 LOC100248092 LOC100247343 LOC18094856 LOC7459881 LOC11420997 LOC123085314 LOC123159638 LOC123449126 LOC123410003 LOC121204747 LOC107957517 LOC106439427 LOC106349833 LOC110433802 LOC8054324 LOC102596120 LOC102581018 LOC102608406 LOC102607647 LOC100834097 LOC100832352 LOC107832581 LOC107818525
Function* Transducin family protein / WD-40 repeat family protein WUS-interacting protein 2 topless-related protein 3 topless-related protein 1 topless-related protein 1-like topless-related protein 4-like protein TPR1-like protein TOPLESS-RELATED PROTEIN 2-like protein TPR1 uncharacterized LOC100193888 topless-related protein 2 protein TOPLESS protein TOPLESS topless-related protein 4 protein TOPLESS topless-related protein 4 topless-related protein 1 protein TPR3 protein TPR1 protein TPR3 protein TOPLESS-RELATED PROTEIN 2 protein TOPLESS-RELATED PROTEIN 2 topless-related protein 1 topless-related protein 4 protein TOPLESS protein TPR1 protein TPR3 topless-related protein 1-like protein TOPLESS-like topless-related protein 3 topless-related protein 4-like protein TPR1 protein TPR2 topless-related protein 3-like topless-related protein 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03082 ATP-dependent chromatin remodeling 4
ath03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00520 Amino sugar and nucleotide sugar metabolism 2
gma00190 Oxidative phosphorylation 2
gma04075 Plant hormone signal transduction 2
gma00260 Glycine, serine and threonine metabolism 2
gma00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04136 Autophagy - other 2
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03083 Polycomb repressive complex 2
zma03250 Viral life cycle - HIV-1 2
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
ppo03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 4
tae00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04146 Peroxisome 2
hvu03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
ghi03082 ATP-dependent chromatin remodeling 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 2
ghi05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 3
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00650 Butanoate metabolism 2
sbi00561 Glycerolipid metabolism 2
sbi01200 Carbon metabolism 2
sbi04120 Ubiquitin mediated proteolysis 2
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 5
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 3
bdi04142 Lysosome 2
bdi05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00511 Other glycan degradation 2
nta00513 Various types of N-glycan biosynthesis 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta00531 Glycosaminoglycan degradation 2
nta00600 Sphingolipid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838144 820831 100800771 100790282 101248801 101244499 4327709 4344728 103634695 100193888 103869731 103842887 100248092 100247343 18094856 7459881 11420997 123085314 123159638 123449126 123410003 121204747 107957517 106439427 106349833 110433802 8054324 102596120 102581018 102608406 102607647 100834097 100832352 107832581 107818525
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