Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.tis   NRB4   mediator of RNA polymerase II transcription subunit 15a-like protein 
 ath-u.4   NRB4   mediator of RNA polymerase II transcription subunit 15a-like protein 
 ath-r.6   NRB4   mediator of RNA polymerase II transcription subunit 15a-like protein 
 ath-m.9   NRB4   mediator of RNA polymerase II transcription subunit 15a-like protein 
 ath-m.4.notissue   NRB4   mediator of RNA polymerase II transcription subunit 15a-like protein 
 ath-m.4.str   NRB4   mediator of RNA polymerase II transcription subunit 15a-like protein 
 ath-m.4.hor   NRB4   mediator of RNA polymerase II transcription subunit 15a-like protein 
 ath-m.4.bio   NRB4   mediator of RNA polymerase II transcription subunit 15a-like protein 
 ath-m.4.lig   NRB4   mediator of RNA polymerase II transcription subunit 15a-like protein 
 ath-e.1   NRB4   mediator of RNA polymerase II transcription subunit 15a-like protein 
 gma-u.4   100782132   mediator of RNA polymerase II transcription subunit 15a-like 
 gma-u.4   100783762   mediator of RNA polymerase II transcription subunit 15a 
 gma-u.4   100792913   mediator of RNA polymerase II transcription subunit 15a 
 ppo-u.4   18096675   mediator of RNA polymerase II transcription subunit 15a 
 ppo-u.4   7470541   mediator of RNA polymerase II transcription subunit 15a 
 ppo-u.4   112323243   mediator of RNA polymerase II transcription subunit 15a-like 
 mtr-u.4   11430217   mediator of RNA polymerase II transcription subunit 15a 
 mtr-u.4   11442044   mediator of RNA polymerase II transcription subunit 15a 
 sly-u.4   101257852   mediator of RNA polymerase II transcription subunit 15a 
 osa-u.4   4346348   mediator of RNA polymerase II transcription subunit 15a 

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Top 50 coexpressed genes to NRB4 (ath-m.4.tis coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 ath4144   Endocytosis  4 146 2.22
 ath565   Ether lipid metabolism  2 26 -
 ath4136   Autophagy - other  5 41 -
 ath562   Inositol phosphate metabolism  2 79 -
 ath564   Glycerophospholipid metabolism  2 99 -

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ath:NRB4 (mediator of RNA polymerase II transcription subunit 15a-like protein) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition specific* Reference

ath-m.4.tis
for
NRB4
ath-u.4
for
NRB4
ath-r.6
for
NRB4
ath-m.9
for
NRB4
ath-m.4.notissue
for
NRB4
ath-m.4.str
for
NRB4
ath-m.4.hor
for
NRB4
ath-m.4.bio
for
NRB4
ath-m.4.lig
for
NRB4
ath-e.1
for
NRB4
gma-u.4
for
100782132
gma-u.4
for
100783762
gma-u.4
for
100792913
ppo-u.4
for
18096675
ppo-u.4
for
7470541
ppo-u.4
for
112323243
mtr-u.4
for
11430217
mtr-u.4
for
11442044
sly-u.4
for
101257852
osa-u.4
for
4346348
1 AT5G43560 TRAF-like superfamily protein 834376 At5g43560 4.9 6.7
 5.9
 5.7
 166.6
 1.8
 3.3
 1.5
 1.4
 5.0
 3.4
2.9
 5.0
4.9
 3.9
2.7
 5.9
4.7
 4.7
4.3
 5.6
5.0
 2.5
2.2
 5.9
5.6
 2.7
1.8
 4.5
2 SWI2 switch 2 839417 At1g03750 4.7 3.9
 2.7
 4.0
 36.6
 4.6
 0.8
 2.4
 0.7
 2.3
 2.2
 1.2
 1.5
 -0.6
 0.4
 -0.4
 2.0
 3.5
 2.0
 2.3
3 AT5G16680 RING/FYVE/PHD zinc finger superfamily protein 831529 At5g16680 4.7 7.4
 7.7
 5.0
 15.2
 5.4
 1.7
 3.9
 1.1
 5.3
 3.5
3.5
 5.6
5.5
 4.6
3.8
 4.7
4.4
 4.8
4.2
 4.3
3.7
 3.2
1.8
 4.2
3.3
 4.1
 3.1
2.6
4 SCAMP4 Secretory carrier membrane protein (SCAMP) family protein 839464 At1g03550 4.5 0.9
 0.5
 1.0
 2846.2
 0.6
 1.0
 1.1
 1.6
 -1.0
 1.6
0.8
 1.2
1.1
 1.8
1.3
 1.1
-0.3
 0.2
-1.6
 0.8
-0.5
 0.6
-1.7
 1.2
0.1
 2.1
0.2
 1.5
0.7
5 UPL4 ubiquitin-protein ligase 4 831758 At5g02880 4.4 4.2
 4.0
 3.3
 968.0
 1.8
 0.7
 2.1
 -0.4
 2.8
 5.0
4.8
 7.3
5.0
 5.8
3.9
 3.2
2.5
 2.9
2.8
 3.1
2.5
 3.2
 5.6
 2.2
 6.1
6 AT3G53390 Transducin/WD40 repeat-like superfamily protein 824507 At3g53390 4.4 4.9
 4.7
 3.8
 60.6
 4.7
 4.2
 2.7
 1.4
 5.1
 2.7
1.4
 1.7
1.2
 2.6
1.9
 3.0
1.7
 2.5
0.7
 2.7
1.5
 1.2
 2.4
 2.5
2.5
 4.2
7 AT4G38930 Ubiquitin fusion degradation UFD1 family protein 830048 At4g38930 4.4 2.3
 2.4
 1.5
 391.2
 1.4
 2.2
 2.3
 1.1
 1.4
 1.7
0.5
 0.3
0.2
 0.6
0.5
 2.5
1.4
 1.5
0.7
 2.3
1.7
 0.6
 1.4
 0.9
 2.4
-0.3
8 YAK1 YAK1-like protein 1 833590 At5g35980 4.4 5.6
 5.7
 4.1
 91.7
 3.3
 2.5
 2.3
 1.3
 3.6
 5.5
4.7
 6.0
5.9
 4.3
3.2
 3.9
2.2
 2.0
1.5
 4.0
2.1
 2.2
 3.9
 4.4
 3.6
3.5
9 VPS15 protein kinase family protein / WD-40 repeat family protein 829059 At4g29380 4.3 4.3
 3.5
 4.0
 538.4
 2.6
 1.6
 1.7
 -1.0
 1.8
 3.5
2.9
 3.6
2.9
 3.7
3.0
 2.9
 3.2
 2.9
 4.9
 7.6
 4.6
 5.2
10 AT2G37150 RING/U-box superfamily protein 818291 At2g37150 4.2 2.1
 3.0
 0.5
 1049.6
 2.1
 -0.1
 1.8
 0.6
 2.4
 3.6
3.5
 4.7
4.7
 4.0
2.5
 2.6
 3.3
 2.2
 0.9
-0.1
 7.6
2.2
 2.0
11 AT1G73130 mucin 843644 At1g73130 4.2 1.1
 1.3
 0.7
 2618.4
 0.4
 0.7
 1.5
 0.7
 1.0
 0.7
 -0.4
 0.0
 -0.6
 0.4
 -0.7
 1.6
 0.8
 1.6
12 LPLAT1 MBOAT (membrane bound O-acyl transferase) family protein 837820 At1g12640 4.1 1.2
 1.4
 0.7
 3128.3
 0.7
 0.7
 1.3
 0.1
 1.8
 0.2
-0.3
 1.5
0.9
 1.9
1.0
 -0.2
-1.3
 -1.1
-1.1
 -0.3
-1.1
 0.4
 -0.0
 2.0
0.5
 -0.9
13 EHD1 EPS15 homology domain 1 821573 At3g20290 4.1 2.2
 1.3
 2.5
 1140.0
 1.2
 1.4
 1.3
 1.0
 0.1
 1.0
-0.8
 0.7
0.6
 1.6
0.3
 -0.8
-1.7
 -0.3
-2.0
 -1.1
-1.5
 1.1
0.5
 0.5
-0.4
 -0.7
-0.8
 -0.5
-1.3
14 AT5G24870 RING/U-box superfamily protein 832556 At5g24870 4.1 1.5
 0.9
 1.7
 4724.3
 0.2
 0.3
 1.5
 -0.3
 0.3
 1.0
0.2
 1.1
1.0
 0.1
0.0
 1.5
0.6
 1.8
1.3
 1.1
0.3
 0.6
-0.4
 2.9
2.0
 2.4
0.7
 1.1
0.9
15 ERF1-1 eukaryotic release factor 1-1 834839 At5g47880 4.0 2.1
 1.9
 1.7
 150.9
 2.5
 0.9
 1.7
 2.1
 0.5
 1.3
1.2
 1.5
1.4
 1.9
1.5
 1.7
0.6
 2.2
0.9
 1.8
0.6
 1.6
0.7
 2.3
0.0
 0.8
0.1
 0.1
-0.3
16 AT2G17030 F-box SKIP23-like protein (DUF295) 816206 At2g17030 4.0 1.2
 0.8
 1.2
 4806.9
 0.5
 -0.3
 0.7
 0.5
 -1.6
 1.5
-0.6
 2.7
0.2
 2.8
0.7
 1.6
0.2
 2.1
1.0
 1.7
0.4
 1.9
1.7
 2.7
1.9
 0.5
-0.2
 0.5
17 VPS35B VPS35 homolog B 843918 At1g75850 4.0 3.3
 3.6
 2.2
 995.5
 1.5
 1.8
 1.5
 0.5
 1.8
 2.5
1.8
 4.5
3.2
 3.4
3.0
 3.2
2.4
 2.4
1.7
 2.7
2.4
 3.1
1.4
 3.5
1.8
 2.9
2.3
 2.1
18 AT5G61450 P-loop containing nucleoside triphosphate hydrolases superfamily protein 836266 At5g61450 4.0 1.7
 2.7
 0.3
 2209.5
 0.5
 0.1
 2.7
 0.8
 4.4
 1.8
0.9
 2.0
-0.4
 1.1
-1.0
 0.5
0.4
 0.5
0.2
 0.5
-0.1
 0.5
 -0.2
 0.2
 0.9
0.7
19 AT1G60610 SBP (S-ribonuclease binding protein) family protein 842355 At1g60610 3.9 0.6
 0.7
 0.3
 5519.4
 0.8
 -0.8
 1.1
 0.5
 -0.9
 2.5
1.4
 1.2
1.2
 1.4
0.3
 2.1
0.4
 0.6
-1.1
 1.7
-0.4

0.7
0.2
 1.3
20 SR30 SERINE-ARGININE PROTEIN 30 837433 At1g09140 3.9 -0.1
 -0.2
 0.1
 6368.5
 -0.2
 1.3
 1.5
 -0.5
 -0.9
 0.1
-0.4
 0.1
-0.3
 0.2
-0.7
 2.8
2.7
 1.8
1.4
 2.5
2.5
 0.7
-0.2
 1.0
1.0
 -1.0
 -0.0
-0.1
21 AT5G56190 Transducin/WD40 repeat-like superfamily protein 835718 At5g56190 3.9 3.6
 3.0
 3.3
 173.6
 2.0
 1.7
 2.8
 1.2
 0.8
 1.8
1.5
 2.1
1.6
 1.2
1.1
 2.0
1.6
 2.2
1.9
 1.9
1.8
 0.9
-1.1
 2.0
1.2
 1.9
-1.0
 2.0
0.1
22 AT1G77770 forkhead box protein, putative (DUF1644) 844114 At1g77770 3.9 1.5
 1.3
 1.3
 1255.7
 2.1
 0.6
 1.3
 0.9
 1.0
 1.1
-0.1
 2.5
0.4
 1.7
0.7
 2.0
1.8
 1.6
0.3
 2.0
1.8
 1.3
-0.1
 1.8
0.4
 1.6
0.3
 1.3
0.5
23 IWS1 Transcription elongation factor (TFIIS) family protein 840105 At1g32130 3.8 2.6
 1.8
 2.8
 583.4
 1.1
 1.6
 2.3
 0.8
 1.3
 2.2
1.2
 2.1
1.8
 1.9
0.7
 4.6
4.1
 3.9
3.8
 4.0
3.9
 1.3
 1.5
 2.1
 0.2
24 nPAP nuclear poly(a) polymerase 829421 At4g32850 3.8 3.6
 2.9
 3.2
 3276.2
 0.4
 1.7
 1.7
 0.8
 0.1
 2.2
1.6
 1.6
1.3
 1.4
1.2
 3.2
2.8
 2.8
2.3
 3.4
2.9
 1.7
0.9
 4.4
4.2
 0.4
-1.9
 1.8
0.8
25 APG9 autophagy 9 (APG9) 817683 At2g31260 3.8 3.8
 4.3
 2.3
 674.3
 2.5
 0.5
 1.4
 1.0
 4.7
 2.9
2.5
 4.9
3.7
 4.1
3.2
 3.2
2.8
 4.3
3.6
 3.2
3.2
 2.5
1.8
 4.8
3.2
 3.1
 1.9
1.2
26 HAB1 HYPERSENSITIVE TO ABA1 843609 At1g72770 3.8 -0.1
 -0.3
 0.2
 2429.7
 1.5
 0.4
 0.9
 -1.8
 -1.0
 1.5
0.7
 0.2
0.2
 0.4
0.1
 1.7
1.2
 1.6
1.0
 1.7
1.2
 2.0
1.3
 1.8
1.2
 1.1
0.4
 0.2
-0.3
27 TBP1 telomeric DNA binding protein 1 831227 At5g13820 3.8 1.1
 1.1
 0.8
 1982.2
 1.7
 0.4
 1.1
 0.2
 -0.8
 0.9
0.8
 2.2
1.8
 1.9
1.0
 5.0
2.5
 3.9
1.9
 4.8
2.6
 1.7
0.3
 2.2
1.3
 2.1
1.2
 1.1
28 AT1G09910 Rhamnogalacturonate lyase family protein 837523 At1g09910 3.8 -0.5
 0.0
 -0.9
 5742.4
 0.4
 0.8
 1.1
 -2.0
 0.7
 1.0
 1.6
 1.4
 3.4
0.1
 2.2
0.1
 3.8
0.1
 2.5
2.1
 1.7
1.0
 1.0
-0.1
 -0.1
-0.6
29 MFP2 multifunctional protein 2 819870 At3g06860 3.7 3.1
 3.1
 2.3
 274.2
 2.4
 0.8
 2.9
 0.4
 1.6
 1.5
1.0
 2.8
2.4
 3.3
1.7
 0.5
0.1
 1.1
0.3
 0.1
-0.0
 2.1
0.4
 2.8
1.1
 2.2
0.3
 1.2
0.0
30 AT2G27285 nuclear speckle splicing regulatory-like protein (DUF2040) 817271 At2g27285 3.7 2.5
 2.5
 1.8
 1016.5
 1.0
 0.7
 2.1
 1.4
 -0.5
 -0.4
-1.0
 1.7
0.5
 0.5
0.1
 -1.4
 -0.3
 -1.3
 -0.3
 1.8
 -1.4
 2.9
31 AT2G37840 Protein kinase superfamily protein 818361 At2g37840 3.7 2.0
 1.6
 1.8
 987.5
 2.2
 1.1
 1.3
 1.1
 1.9
 1.5
0.9
 4.0
1.6
 2.5
1.3
 3.5
2.1
 3.5
3.3
 3.6
2.0
 1.1
 2.2
 1.9
1.9
 2.4
32 AT2G45500 AAA-type ATPase family protein 819158 At2g45500 3.7 1.8
 1.9
 1.2
 2156.4
 0.7
 -0.5
 2.3
 1.2
 0.1
 1.1
0.6
 2.2
1.3
 1.3
0.2
 -0.1
 1.2
 -0.4
 -0.7
 0.8
 0.8
 2.3
33 FC2 LAMMER-type protein kinase AFC2 828576 At4g24740 3.6 1.6
 0.8
 1.9
 707.3
 1.7
 0.8
 2.2
 1.4
 -0.8
 -0.0
-0.3
 1.3
0.7
 1.0
0.5
 4.5
2.1
 3.1
1.6
 4.4
2.1
 0.9
0.3
 1.8
1.4
 0.2
-1.4
 0.5
-0.2
34 ABA3 molybdenum cofactor sulfurase (LOS5) (ABA3) 838224 At1g16540 3.6 2.6
 2.8
 1.7
 55.3
 2.7
 2.1
 2.2
 1.0
 1.4
 2.2
 3.0
 2.8
 1.6
 2.4
 1.2
 0.3
 2.3
 1.9
 1.3
35 AT3G53930 Protein kinase superfamily protein 824560 At3g53930 3.6 3.3
 3.2
 2.5
 761.3
 1.5
 1.7
 1.6
 1.0
 3.4
 1.5
0.9
 4.0
1.6
 2.5
1.3
 3.5
2.1
 3.5
3.3
 3.6
2.0
 1.1
 2.2
 1.9
1.9
 2.4
36 ORP1C OSBP(oxysterol binding protein)-related protein 1C 826368 At4g08180 3.6 3.4
 3.0
 3.0
 335.7
 2.5
 2.0
 1.6
 2.8
 2.7
 1.3
0.9
 3.0
1.5
 2.3
2.0
 2.0
1.7
 1.9
1.0
 2.0
1.8
 1.6
1.0
 3.1
3.0
 2.6
 0.3
37 PLDP1 phospholipase D P1 820932 At3g16785 3.6 4.1
 2.7
 4.3
 54.1
 2.1
 4.0
 2.4
 1.6
 3.0
 2.5
2.4
 4.5
4.0
 3.6
3.5
 2.5
1.6
 2.4
1.5
 2.2
1.3
 2.6
1.0
 3.3
1.8
 3.6
0.3
 1.3
0.3
38 AT3G51250 Senescence/dehydration-associated protein-like protein 824288 At3g51250 3.6 3.1
 3.7
 1.6
 1746.5
 1.1
 0.9
 1.4
 1.6
 1.9
 2.1
1.0
 1.5
1.2
 2.4
2.1
 1.8
0.7
 1.3
0.9
 2.1
0.5
 -0.9
-1.7
 0.4
0.1
 1.5
-0.3
 0.4
-1.2
39 PMSR3 peptidemethionine sulfoxide reductase 3 830638 At5g07470 3.6 2.8
 2.4
 2.3
 1201.8
 1.3
 2.0
 2.2
 -0.6
 2.0
 1.3
1.2
 2.0
1.0
 2.0
0.9
 1.2
0.8
 1.4
0.1
 1.4
1.2
 -0.0
-0.8
 1.1
1.1
 0.3
0.2
 1.2
0.8
40 APG7 ThiF family protein 834630 At5g45900 3.6 2.5
 2.6
 1.8
 827.5
 1.6
 2.2
 1.3
 0.5
 4.0
 -0.1
 1.2
 1.4
 2.7
 1.9
 2.5
 1.1
 2.5
 3.4
 1.7
41 AT3G62590 alpha/beta-Hydrolases superfamily protein 825433 At3g62590 3.6 1.4
 1.2
 1.2
 1417.6
 1.6
 -0.1
 1.5
 -0.3
 1.3
 0.3
-0.0
 0.5
0.3
 0.5
0.5
 0.1
 -0.4
 -0.0
 0.1
 1.3
 2.3
 -0.1
42 AT3G24740 cellulose synthase, putative (DUF1644) 822072 At3g24740 3.6 1.6
 1.5
 1.2
 1320.7
 1.7
 0.8
 2.1
 -0.9
 -0.8
 1.5
0.5
 2.1
1.8
 2.5
1.8
 1.7
 0.7
 1.3
 -0.1
 2.3
 0.7
 1.0
43 AT1G10410 CW14 protein (DUF1336) 837581 At1g10410 3.6 2.1
 1.7
 2.0
 351.1
 1.9
 2.1
 1.7
 1.8
 0.1
 0.1
-0.3
 0.9
0.5
 0.7
0.6
 -0.8
-0.9
 0.1
-1.2
 -0.8
-0.9
 -1.2
 -0.1
 1.1
-0.4
 -0.2
44 AT3G52570 alpha/beta-Hydrolases superfamily protein 824423 At3g52570 3.5 0.6
 1.5
 -0.4
 4244.5
 0.8
 1.2
 1.7
 -0.3
 0.1
 -1.2
-1.6
 0.0
-1.9
 -0.7
-1.2
 1.6
 2.0
 2.0
 0.5
 -0.5
 -0.4
 -0.8
45 ARI1 RING/U-box superfamily protein 829587 At4g34370 3.5 -0.0
 -0.1
 0.0
 3958.4
 0.7
 0.4
 1.1
 0.2
 0.7
 1.4
0.8
 2.6
2.5
 2.0
2.0
 1.6
 2.1
 1.4
 1.6
 3.5
 0.7
 1.7
46 AT2G42270 U5 small nuclear ribonucleoprotein helicase 818828 At2g42270 3.5 3.3
 2.6
 3.1
 2994.8
 0.6
 1.4
 0.8
 1.9
 2.0
 3.3
3.0
 6.6
5.3
 6.3
4.8
 2.8
2.3
 3.1
2.2
 3.0
2.4
 3.0
0.2
 5.7
2.3
 4.0
2.3
 6.4
47 AT3G23540 alpha/beta-Hydrolases superfamily protein 821933 At3g23540 3.5 1.1
 2.3
 -0.3
 1308.5
 1.3
 0.1
 2.8
 1.4
 1.5
 2.8
0.3
 2.6
1.3
 1.5
1.0
 1.6
0.7
 1.3
0.4
 1.5
0.4
 0.9
-0.2
 2.2
0.3
 2.7
 3.0
48 FAB1B phosphatidylinositol-4-phosphate 5-kinase family protein 820647 At3g14270 3.5 5.4
 5.3
 4.0
 913.6
 2.5
 0.1
 1.0
 1.2
 2.1
 5.9
5.1
 6.2
5.1
 6.2
5.2
 2.3
1.8
 2.5
2.2
 1.9
1.6
 4.0
2.0
 6.0
3.6
 2.8
2.0
 2.8
0.5
49 PEN2 PTEN 2 821476 At3g19420 3.5 2.8
 3.4
 1.4
 592.0
 2.0
 0.9
 2.1
 -0.2
 1.8
 3.8
3.6
 7.8
4.3
 4.8
2.5
 4.5
4.2
 3.3
3.3
 4.5
4.1
 1.5
1.0
 2.3
1.6
 3.2
0.4
 3.9
50 ATG18H autophagy 18h-like protein 841912 At1g54710 3.5 4.7
 5.0
 3.1
 1053.2
 2.1
 0.6
 1.3
 1.7
 4.0
 2.9
2.8
 4.6
4.1
 4.3
3.9
 3.1
2.5
 3.2
2.3
 3.4
2.5
 2.5
1.0
 4.8
4.6
 2.3
 3.0
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