Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.4   LSH5   LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) 
 ath-r.6   LSH5   LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) 
 ath-e.1   LSH5   LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) 
 ath-u.4   LSH9   LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) 
 ath-u.4   LSH7   LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) 
 gma-u.4   100810350   protein G1-like7 
 gma-u.4   100803605   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 
 gma-u.4   100791424   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 
 ppo-u.4   7480386   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 
 ppo-u.4   18102467   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 
 mtr-u.4   25485963   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 
 mtr-u.4   25499270   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 
 sly-u.4   101263979   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 
 sly-u.4   101262247   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like 
 sly-u.4   TFAM1   TMF family protein 
 osa-u.4   4336401   protein G1-like4 
 osa-u.4   107278201   protein G1-like8 
 osa-u.4   4330024   protein G1-like3 

close


Top 50 coexpressed genes to LSH5 (ath-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 ath100   Steroid biosynthesis  1 36 -
 ath350   Tyrosine metabolism  1 41 -
 ath260   Glycine, serine and threonine metabolism  1 70 -
 ath230   Purine metabolism  1 87 -
 ath4075   Plant hormone signal transduction  3 291 -

close


ath:LSH5 (LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)) External Links;


Show/Hide Columns:        
Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition specific* Reference

ath-u.4
for
LSH5
ath-r.6
for
LSH5
ath-e.1
for
LSH5
ath-u.4
for
LSH9
ath-u.4
for
LSH7
gma-u.4
for
100810350
gma-u.4
for
100803605
gma-u.4
for
100791424
ppo-u.4
for
7480386
ppo-u.4
for
18102467
mtr-u.4
for
25485963
mtr-u.4
for
25499270
sly-u.4
for
101263979
sly-u.4
for
101262247
sly-u.4
for
TFAM1
osa-u.4
for
4336401
osa-u.4
for
107278201
osa-u.4
for
4330024
1 GDU1 glutamine dumper 1 829301 At4g31730 5.1 5.3
 3.7
 4.2
2.9
 4.4
2.9
 2.2
1.4
 1.6
1.0
 1.9
1.7
 2.7
2.6
 1.5
1.4
 3.0
2.0
 0.3
0.1
 0.9
0.7
 1.0
0.3
 1.3
1.2
 0.1
-0.5
 1.1
0.9
 0.4
-0.7
2 LSH3 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) 817672 At2g31160 4.2 4.6
 3.9
 4.8
3.6
 4.8
4.0
 7.9
3.2
 4.8
3.5
 4.6
4.5
 3.5
3.5
 7.5
5.8
 5.2
3.9
 4.5
4.0
 2.0
2.0
 2.3
1.9
 2.4
2.1
 2.6
2.0
 3.6
3.2
 4.7
3.9
3 SP1L5 SPIRAL1-like5 828449 At4g23496 4.1 4.5
 1.5
 2.3
 5.2
 1.4
1.3
 1.4
0.7
 2.1
0.7
 1.3
1.0
 1.6
-0.2







4 LSH7 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) 844218 At1g78815 3.9 4.2
 2.7
 4.8
3.6
 4.8
4.0
 7.9
3.2
 4.8
3.5
 4.6
4.5
 3.5
3.5
 7.5
5.8
 5.2
3.9
 4.5
4.0
 2.0
2.0
 2.3
1.9
 2.4
2.1
 2.6
2.0
 3.6
3.2
 4.7
3.9
5 APT2 adenine phosphoribosyl transferase 2 844345 At1g80050 3.9 4.1
 1.9
 2.9
0.6
 2.2
1.7
 0.6
0.0
 1.6
1.3
 1.1
0.6
 1.1
1.0
 2.3
1.7
 1.3
0.3
 2.4
1.3
 1.3
-1.1
 -0.4
-0.9
 -0.5
-1.0
 0.9
0.6
 1.1
0.6
 1.0
0.6
6 GDU3 glutamine dumper 3 835875 At5g57685 3.7 4.0
 2.8
 4.2
2.9
 4.4
2.9
 2.2
1.4
 1.6
1.0
 1.9
1.7
 2.7
2.6
 1.5
1.4
 3.0
2.0
 0.3
0.1
 0.9
0.7
 1.0
0.3
 1.3
1.2
 0.1
-0.5
 1.1
0.9
 0.4
-0.7
7 PAP2 phytochrome-associated protein 2 829029 At4g29080 3.7 3.9
 2.0
 1.9
 2.4
 0.6
0.3
 0.8
0.5
 2.1
0.9
 2.2
0.4
 1.2
0.8
 3.3
3.2
 0.6
-0.1
 1.8
1.2
 0.9
0.3
 2.4
1.9
 0.9
0.6
 1.3
0.8
 1.0
0.6
8 LSH9 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) 28720146 At4g18610 3.6 3.9
 2.2
 4.8
3.6
 4.8
4.0
 7.9
3.2
 4.8
3.5
 4.6
4.5
 3.5
3.5
 7.5
5.8
 5.2
3.9
 4.5
4.0
 2.0
2.0
 2.3
1.9
 2.4
2.1
 2.6
2.0
 3.6
3.2
 4.7
3.9
9 AT2G18570 UDP-Glycosyltransferase superfamily protein 816372 At2g18570 3.5 3.7
 1.1
 4.5
2.2
 2.9
2.9
 0.2
-0.3
 1.1
0.7
 1.4
0.3
 -0.1
 -0.5
 0.2
 -0.2
 0.3
-0.6
 0.6
-0.6
 1.9
-0.8


10 GDU2 glutamine dumper 2 828681 At4g25760 3.4 3.5
 1.7
 4.2
2.9
 4.4
2.9
 2.2
1.4
 1.6
1.0
 1.9
1.7
 2.7
2.6
 1.5
1.4
 3.0
2.0
 0.3
0.1
 0.9
0.7
 1.0
0.3
 1.3
1.2
 0.1
-0.5
 1.1
0.9
 0.4
-0.7
11 NRT1.9 Major facilitator superfamily protein 838469 At1g18880 3.3 3.6
 2.7
 2.7
1.0
 2.8
0.4
 0.2
0.2
 1.5
0.7
 -0.2
-0.2
 1.5
1.4
 -0.3
-1.1
 -0.3
-1.4
 0.0
-1.7
 1.6
0.8
 1.2
-0.4
 1.7
0.1
 0.8
-0.7
 2.3
-0.1
 0.6
0.2
12 LSH6 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) 837220 At1g07090 3.3 3.3
 3.5
 4.8
3.6
 4.8
4.0
 7.9
3.2
 4.8
3.5
 4.6
4.5
 3.5
3.5
 7.5
5.8
 5.2
3.9
 4.5
4.0
 2.0
2.0
 2.3
1.9
 2.4
2.1
 2.6
2.0
 3.6
3.2
 4.7
3.9
13 CYP710A2 cytochrome P450, family 710, subfamily A, polypeptide 2 818012 At2g34490 3.3 3.3
 2.9
 0.6
0.2
 1.7
-0.2
 0.1
-1.0
 0.1
-0.4
 0.5
0.4

0.3
 0.3
 -0.7
 0.1
 -1.8
 0.7
0.3
 1.6
-0.3
 0.9
0.5
14 AT4G14060 Polyketide cyclase/dehydrase and lipid transport superfamily protein 827042 At4g14060 3.3 3.6
 2.7
 1.9
1.7
 4.6
2.3
 0.5
 1.0
 0.2
 0.9
0.7
 0.7
-0.2
 2.3
 1.0





15 AHL20 AT-hook motif nuclear-localized protein 20 827093 At4g14465 3.2 3.5
 2.9
 2.4
1.5
 4.0
1.7
 0.9
0.8
 1.2
1.2
 2.2
2.0
 1.6
1.2
 1.8
1.0
 1.2
1.1
 -0.4
-0.6
 1.4
0.8
 0.7
-0.0
 1.4
1.1
 -0.1
-0.2
 1.2
1.0
 0.3
-0.3
16 BLH8 BEL1-like homeodomain 8 817343 At2g27990 3.2 3.6
 2.3
 1.0
0.1
 1.0
0.9
 1.1
0.7
 4.0
3.4
 3.2
1.8
 0.2
-0.6
 1.0
0.3
 1.5
 0.3
 1.7
0.4
 0.7
0.5
 1.0
0.3
 1.2
0.3
 1.8
1.8
 2.2
1.9
17 AT2G46535 uncharacterized protein 819265 At2g46535 3.2 3.4
 2.3
 1.5
0.2
 1.8
-0.0
 0.3
0.1
 1.7
1.5
 0.8
0.8
 1.5
0.9
 1.4
-0.0
 2.9
1.2
 0.6
0.0
 2.1
0.8
 1.1
0.5
 0.8
0.8


18 BOP2 Ankyrin repeat family protein / BTB/POZ domain-containing protein 818735 At2g41370 3.1 3.3
 3.6
 0.8
 2.0
 1.1
-0.3
 2.3
2.1
 3.2
2.8
 2.0
1.6
 2.9
2.2
 1.9
-0.3
 4.3
2.4
 1.0
0.7
 2.4
2.1
 2.5
1.5
 1.2
 0.9
 2.5
19 ZFP6 zinc finger protein 6 843022 At1g67030 3.1 3.1
 1.6
 3.2
2.8
 3.7
2.0
 1.4
1.2
 2.6
2.4
 1.4
1.3
 2.0
1.1
 1.5
1.2
 3.1
1.9
 0.0
-0.0
 1.8
0.7
 2.1
0.1
 1.5
0.9
 0.3
 0.4
 0.9
20 PUP4 purine permease 4 839967 At1g30840 3.1 3.1
 0.5
 3.3
 4.1
 0.5
-0.1
 0.7
-0.4
 0.5
0.1
 2.0
 1.1

2.0
 0.5
 0.7
 -0.3
-0.3
 0.7
0.3
 -0.1
-0.3
21 MYB61 myb domain protein 61 837480 At1g09540 3.1 3.3
 1.8
 1.3
1.0
 2.3
0.3
 2.5
2.4
 1.7
1.5
 1.6
1.3
 0.6
-0.8
 -0.8
-0.9
 -0.3
-0.7
 -0.5
-0.9
 1.8
 0.8
 1.2
 -0.1
 -0.4
 0.1
22 UMAMIT11 nodulin MtN21 /EamA-like transporter family protein 818687 At2g40900 3.1 3.2
 1.0
 2.6
 1.4












23 AT1G77520 O-methyltransferase family protein 844088 At1g77520 3.0 3.2
 1.1
 1.8
1.3
 1.6
1.2






-1.1
 0.6
 -0.8


24 OFP7 ovate family protein 7 816365 At2g18500 3.0 3.4
 2.9
 2.1
 2.2












25 LSH4 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) 821908 At3g23290 3.0 3.1
 4.7
 4.8
3.6
 4.8
4.0
 7.9
3.2
 4.8
3.5
 4.6
4.5
 3.5
3.5
 7.5
5.8
 5.2
3.9
 4.5
4.0
 2.0
2.0
 2.3
1.9
 2.4
2.1
 2.6
2.0
 3.6
3.2
 4.7
3.9
26 AT5G38010 UDP-Glycosyltransferase superfamily protein 833780 At5g38010 3.0 3.2
 1.6
 2.0
1.5
 2.1
1.6
 1.9
0.3
 0.2
-0.8
 0.4
-1.1
 2.4
1.2
 1.0
-0.0
 -1.0
-1.2
 -0.5
-0.5
 -0.0
-0.3
 0.7
0.2
 0.7
0.4
 0.8
0.0
 0.5
0.4
 0.6
-0.1
27 CYP705A19 cytochrome P450, family 705, subfamily A, polypeptide 19 821553 At3g20100 2.9 3.4
 1.4
 1.5
1.3
 1.8
1.8
 0.6
 -0.3
 1.1
 0.1
-2.0
 1.0
-0.7
 -0.6
 0.3





28 AT3G45680 Major facilitator superfamily protein 823710 At3g45680 2.9 3.2
 0.9
 1.9
1.7
 2.0
1.1
 1.3
 1.4
 1.1
 0.5
 0.3
 1.9
1.0
 -0.6
-1.0
 1.3
0.8
 -0.2
-0.6
 1.0
-0.8
 0.0
 1.1
 0.8
29 NCRK Protein kinase superfamily protein 817371 At2g28250 2.9 3.3
 2.6
 1.6
 4.3
 1.1
0.6
 1.6
0.9
 1.0
1.0
 0.1
-0.7
 -0.4
-0.6
 0.4
 -0.6
 2.7
 0.3
 0.6
 -0.2
 0.4
 0.8
30 ABCG14 ATP-binding cassette 14 840064 At1g31770 2.9 3.2
 4.2
 3.5
 1.6
 1.3
0.7
 1.3
0.8
 1.6
1.4
 3.4
2.9
 1.3
-0.4
 1.5
 -0.9
 0.4
 1.7
 -0.5
 0.1
 0.8
 -0.8
31 EXL7 EXORDIUM like 7 818081 At2g35150 2.9 2.7
 1.7
 3.6
-0.1
 5.9
-0.7
 0.5
 0.6
 0.6
 -0.4
-0.6
 0.2
-0.1
 1.3
 -0.1
 1.3
1.1
 0.6
0.2
 1.1
0.5
 -0.1
 0.7
 0.4
32 AT4G34600 uncharacterized protein 829612 At4g34600 2.9 2.9
 2.8
 2.4
 2.0
 -0.2
 -0.1
 0.7
 1.9
 -0.0
 1.7
 -0.4
 0.6
 0.1
 -0.4
 -0.5
-1.7
 1.1
-0.5
 -0.2
-1.6
33 LBD4 LOB domain-containing protein 4 840020 At1g31320 2.8 3.1
 0.6
 4.8
2.2
 4.0
3.2
 0.8
-0.2
 1.0
0.2
 2.2
-0.3
 0.9
0.3
 -0.2
-0.8
 2.1
1.9
 0.7
-0.8
 1.5
 1.5
 2.1


34 AT1G35250 Thioesterase superfamily protein 840414 At1g35250 2.8 3.1
 1.5
 1.5
0.0
 3.8
0.1
 -0.5
 -0.8
 0.0
 -0.7
 -1.4
 -0.2
 -0.3
 0.6
-0.4
 -0.1
-0.3
 0.2
-0.0
 -0.1
 0.3
 -0.3
35 SLY2 F-box family protein 834869 At5g48170 2.8 3.0
 0.3
 0.7
 1.3






0.9
 -0.5
 1.3
 0.5
 0.4
 1.0
36 KNAT1 homeobox knotted-like protein 826364 At4g08150 2.8 3.1
 2.8
 0.7
 4.0
 1.6
0.6
 3.4
3.0
 3.0
2.2
 2.6
 4.3
 3.9
 0.9
 1.1
 3.1
 0.8
 2.9
1.6
 0.2
0.1
 1.6
1.1
37 ATPMEPCRD Plant invertase/pectin methylesterase inhibitor superfamily 818907 At2g43050 2.8 3.0
 1.6
 0.5
0.5
 2.4
0.8


0.5
 -1.2




0.4
 0.1
 -0.8
38 AT4G32860 Avr9/Cf-9 rapidly elicited protein 829422 At4g32860 2.8 3.1
 1.2
 3.4
 2.6




1.1
0.3
 -0.9
-1.5





39 AT1G13635 DNA glycosylase superfamily protein 2745751 At1g13635 2.8 3.0
 1.2
 1.8
 2.4
 0.6
0.0
 1.7
1.4
 0.9
0.8
 1.4
0.5
 -0.7
-0.9
 1.2
0.5
 -1.3
-1.4
 2.2
 -1.2
 0.6
 -0.2
 1.2
 0.3
40 AT1G31710 Copper amine oxidase family protein 840058 At1g31710 2.8 3.2
 2.5
 2.4
1.5
 1.9
1.5
 1.0
0.5
 1.0
0.7
 0.3
-0.1
 -0.1
-0.6
 0.1
-0.4
 -0.1
-0.4
 1.1
0.6


-0.0
-0.1
 0.3
0.1
 1.6
0.1
41 AT1G78780 pathogenesis-related family protein 844214 At1g78780 2.8 2.8
 1.4
 1.1
 3.0
 0.7
0.0
 0.2
-0.7
 1.4
0.9
 1.1
-0.1
 0.1
-0.0
 -0.4
-1.9
 2.9
-0.1
 0.8
0.4
 1.2
-0.1
 0.3
-0.3
 -0.6
-0.8
 0.1
0.1
 0.1
-0.7
42 NEK4 NIMA-related kinase 4 825503 At3g63280 2.8 3.0
 0.1
 3.0
-0.0
 3.5
1.3
 1.6
0.5
 0.7
0.5
 0.8
0.1
 0.5
-0.6
 0.8
-0.1
 2.2
1.1
 0.0
-0.2
 0.1
0.1
 1.2
0.9
 1.1
-0.1
 1.2
0.3
 0.6
0.0
 1.0
0.9
43 AT5G62770 membrane-associated kinase regulator, putative (DUF1645) 836398 At5g62770 2.8 2.6
 0.4
 2.4
0.3
 1.7
-0.0
 1.0
0.8
 0.4
0.1
 0.9
0.1
 0.5
0.2
 0.0
0.0
 1.2
-0.2
 0.6
0.0
 0.8
0.1
 0.6
-0.3
 1.9
0.7
 0.4
0.3
 0.8
0.5
 1.4
1.4
44 AT3G63210 mediator of aba-regulated dormancy protein (DUF581) 825496 At3g63210 2.7 2.6
 0.6
 0.8
0.1
 2.0
0.5
 1.0
0.8
 1.9
1.8
 1.7
1.4
 2.5
2.1
 2.5
2.3
 1.6
1.3
 -0.3
-0.4
 0.1
 0.6
 1.2
 0.7
 1.3
 0.0
45 ARR11 response regulator 11 843096 At1g67710 2.7 2.7
 2.5
 1.6
 3.3
 1.6
0.5
 1.0
0.7
 1.2
0.9
 3.0
1.3
 1.2
-0.2
 0.8
0.4
 -0.7
-1.2
 -0.1
 -0.0
 0.1
 -0.5
 -0.5
 -0.6
46 AT3G45160 Putative membrane lipoprotein 823652 At3g45160 2.7 2.9
 1.5
 3.6
 4.1












47 AT3G10910 RING/U-box superfamily protein 820261 At3g10910 2.7 2.9
 1.5
 0.8
-0.5
 1.3
0.1
 1.4
0.7
 1.2
0.8
 1.2
1.2
 2.3
1.9
 0.8
-0.0
 1.1
1.0
 0.9
0.1
 1.2
 0.5
 1.5
 0.7
0.5
 0.4
-0.1
 1.1
0.6
48 AT2G44940 Integrase-type DNA-binding superfamily protein 819103 At2g44940 2.7 2.7
 1.1
 2.7
1.1
 1.4
1.3
 1.9
1.5
 1.9
1.8
 1.2
0.9
 1.4
0.9
 1.4
0.4
 1.3
1.2
 0.6
0.6
 0.5
0.5
 1.1
0.3
 1.9
1.6
 0.6
0.5
 1.6
1.3
 1.8
1.3
49 AT1G22065 uncharacterized protein 6240889 At1g22065 2.6 2.8
 0.4
 3.6
 3.1












50 AT5G10770 Eukaryotic aspartyl protease family protein 830944 At5g10770 2.6 2.8
 1.9
 1.8
0.7
 1.9
-0.3
 2.3
1.7
 1.4
0.9
 1.1
1.0
 1.1
0.7
 0.8
0.7
 1.3
0.3
 1.0
-0.2
 1.1
 -1.2
 0.8
 0.2
0.2
 0.9
0.8
 1.0
0.9
The preparation time of this page was 2.1 [sec].