Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.4   ALY3   DNA binding protein 
 ath-r.6   ALY3   DNA binding protein 
 ath-m.9   ALY3   DNA binding protein 
 ath-m.4.notissue   ALY3   DNA binding protein 
 ath-m.4.tis   ALY3   DNA binding protein 
 ath-m.4.str   ALY3   DNA binding protein 
 ath-m.4.hor   ALY3   DNA binding protein 
 ath-m.4.bio   ALY3   DNA binding protein 
 ath-m.4.lig   ALY3   DNA binding protein 
 ath-e.1   ALY3   DNA binding protein 
 gma-u.4   100816217   protein ALWAYS EARLY 2 
 gma-u.4   100781646   protein ALWAYS EARLY 3 
 gma-u.4   100789533   protein ALWAYS EARLY 2 
 ppo-u.4   7473283   protein ALWAYS EARLY 2 
 ppo-u.4   18101840   protein ALWAYS EARLY 3 
 ppo-u.4   7475371   protein ALWAYS EARLY 3 
 mtr-u.4   11415119   protein ALWAYS EARLY 3 
 mtr-u.4   11426420   protein ALWAYS EARLY 2 
 sly-u.4   101265115   protein ALWAYS EARLY 3-like 
 sly-u.4   101249204   protein ALWAYS EARLY 3 
 osa-u.4   9272548   protein ALWAYS EARLY 2 

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Top 50 coexpressed genes to ALY3 (ath-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 ath3022   Basal transcription factors  3 44 3.73
 ath310   Lysine degradation  1 31 -
 ath220   Arginine biosynthesis  1 36 -
 ath250   Alanine, aspartate and glutamate metabolism  1 51 -
 ath3013   Nucleocytoplasmic transport  2 103 -

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ath:ALY3 (DNA binding protein) External Links;


Show/Hide Columns:        
Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition specific* Reference

ath-u.4
for
ALY3
ath-r.6
for
ALY3
ath-m.9
for
ALY3
ath-m.4.notissue
for
ALY3
ath-m.4.tis
for
ALY3
ath-m.4.str
for
ALY3
ath-m.4.hor
for
ALY3
ath-m.4.bio
for
ALY3
ath-m.4.lig
for
ALY3
ath-e.1
for
ALY3
gma-u.4
for
100816217
gma-u.4
for
100781646
gma-u.4
for
100789533
ppo-u.4
for
7473283
ppo-u.4
for
18101840
ppo-u.4
for
7475371
mtr-u.4
for
11415119
mtr-u.4
for
11426420
sly-u.4
for
101265115
sly-u.4
for
101249204
osa-u.4
for
9272548
1 CHR5 chromatin remodeling 5 815823 At2g13370 9.2 8.9
 7.1
 67.5
 1.2
 2.2
 1.8
 3.8
 1.6
 5.5
 2.8
2.7
 4.2
3.4
 4.3
4.0
 2.6
1.3
 3.0
1.1
 3.8
2.6
 6.3
4.6
 4.2
4.0
 4.4
 3.7
 4.9
2 TTN8 Structural maintenance of chromosomes (SMC) family protein 824632 At3g54670 8.8 7.9
 7.3
 9.8
 0.7
 2.7
 1.3
 3.6
 1.2
 6.1
 4.2
3.5
 6.4
5.1
 6.3
4.2
 2.2
 2.9
 1.8
 5.8
4.0
 5.4
2.7
 5.7
 5.2
 5.7
3 AT5G43560 TRAF-like superfamily protein 834376 At5g43560 8.4 7.8
 6.8
 44.9
 2.8
 2.3
 2.7
 2.3
 1.1
 5.0
 2.7
1.8
 3.4
3.2
 3.8
3.1
 2.3
2.1
 1.2
0.9
 3.4
2.9
 5.2
2.9
 4.2
1.8
 2.5
1.8
 3.8
2.5
 2.2
4 THO2 THO2 839081 At1g24706 8.4 8.7
 5.8
 103.0
 2.2
 2.7
 1.1
 1.6
 0.7
 4.7
 3.5
3.3
 4.7
3.5
 4.3
3.9
 1.4
0.8
 1.4
0.8
 3.2
2.4
 3.9
3.7
 4.9
3.3
 4.4
 5.0
 5.8
5 NUA nuclear pore anchor 844268 At1g79280 8.0 7.8
 6.1
 220.1
 1.1
 1.8
 0.9
 2.6
 2.2
 4.3
 3.2
2.7
 2.4
1.9
 3.8
3.3
 1.9
 1.6
 2.0
 3.7
 2.6
 4.5
 4.8
 2.7
6 SNL1 SIN3-like 1 821265 At3g01320 7.8 8.9
 4.6
 92.1
 3.2
 1.6
 1.9
 2.6
 1.7
 6.1
 4.1
3.7
 6.9
5.9
 4.3
3.7
 0.9
0.8
 2.6
2.2
 3.4
2.9
 8.5
5.2
 5.7
5.3
 5.5
4.1
 4.4
3.9
 6.2
1.5
7 EMB2773 PHD finger family protein 831407 At5g15540 7.7 7.5
 5.7
 274.7
 2.3
 1.8
 1.1
 2.4
 0.9
 5.1
 3.6
3.1
 3.9
3.8
 4.2
4.1
 1.3
 1.1
 1.6
 5.2
 4.8
 4.7
 3.5
 4.0
8 AT3G24870 Helicase/SANT-associated, DNA binding protein 822085 At3g24870 7.6 8.2






5.1
 3.4
3.4
 4.9
4.3
 4.3
4.0
 2.3
2.1
 1.4
1.4
 2.6
1.6
 5.3
1.1
 4.3
0.5
 5.6
4.6
 4.6
4.5
 7.0
3.4
9 AT2G33435 RNA-binding (RRM/RBD/RNP motifs) family protein 817909 At2g33435 7.5 9.1
 3.9
 121.4
 0.1
 2.1
 2.0
 3.3
 3.9
 5.6
 2.3
0.7
 3.9
-0.3
 2.6
0.1
 2.5
 2.4
 2.0
 2.7
 1.6
 4.9
 2.3
 3.3
0.6
10 HAF01 HAC13 protein (HAC13) 840169 At1g32750 7.4 7.5
 5.4
 73.7
 3.8
 1.8
 0.7
 3.0
 1.6
 5.3
 3.5
3.0
 4.1
3.2
 5.0
4.3
 2.3
2.1
 1.5
0.8
 1.3
1.0
 6.6
 4.2
 4.6
 3.9
 4.2
11 AT3G24880 Helicase/SANT-associated, DNA binding protein 822086 At3g24880 7.3 7.9






3.7
 3.4
3.4
 4.9
4.3
 4.3
4.0
 2.3
2.1
 1.4
1.4
 2.6
1.6
 5.3
1.1
 4.3
0.5
 5.6
4.6
 4.6
4.5
 7.0
3.4
12 MOM ATP-dependent helicase family protein 837322 At1g08060 7.3 7.5
 5.0
 818.1
 1.7
 2.0
 1.5
 1.2
 0.7
 4.7
 3.7
3.1
 4.6
3.8
 3.6
3.6
 3.4
0.9
 1.5
1.4
 4.4
1.0
 4.3
2.0
 3.9
2.7
 4.6
0.0
 5.1
0.8
 4.0
2.0
13 AT3G50380 vacuolar protein sorting-associated protein, putative (DUF1162) 824202 At3g50380 7.2 6.5
 6.0
 14.0
 1.1
 4.6
 2.7
 0.9
 3.0
 3.5
 1.7
 3.1
 2.3
 1.0
 2.5
 3.3
 4.8
 4.4
 2.6
 3.2
 4.2
14 SNL5 SIN3-like 5 842283 At1g59890 7.2 7.4
 5.1
 606.6
 0.4
 1.3
 0.7
 3.7
 1.4
 8.8










15 SDG2 SET domain protein 2 827183 At4g15180 7.2 7.9






6.0
 4.0
3.5
 4.9
4.3
 4.8
4.0
 2.1
1.8
 2.4
1.9
 3.1
2.6
 4.1
2.4
 4.1
3.9
 5.5
 3.8
 5.7
16 MYA1 myosin 1 838333 At1g17580 7.2 6.9
 5.5
 573.1
 2.9
 1.2
 0.4
 1.5
 1.8
 3.1
 4.2
2.9
 4.9
4.4
 2.6
2.0
 1.5
1.1
 2.8
2.1
 2.9
2.6
 5.8
2.6
 3.5
2.1
 4.0
1.8
 3.0
2.0
 2.7
2.2
17 AT1G48090 calcium-dependent lipid-binding family protein 841226 At1g48090 7.1 6.8
 5.4
 42.4
 3.3
 2.7
 1.4
 2.0
 0.8
 3.3
 2.0
 3.8
 2.3
 1.0
 1.7
 3.9
 4.4
 4.0
 5.2
 2.8
 4.2
18 emb2410 embryo defective 2410 817107 At2g25660 7.0 5.6
 6.5
 643.7
 1.2
 2.0
 2.0
 0.6
 0.6
 4.4
 0.9
0.4
 2.4
1.9
 1.2
0.6
 1.5
 2.5
 2.2
 4.0
3.0
 2.4
1.5
 2.8
 1.7
 3.7
19 CCT RNA polymerase II transcription mediator 827954 At4g00450 6.9 6.8
 5.1
 48.4
 4.2
 2.7
 1.5
 3.7
 0.3
 3.4
 2.3
2.3
 4.1
3.6
 3.7
3.5
 3.0
2.3
 1.6
0.7
 4.3
4.0
 5.2
2.7
 3.9
3.7
 4.2
 3.6
 2.7
1.6
20 XI-I myosin 829456 At4g33200 6.9 8.1
 3.9
 354.2
 1.1
 0.8
 0.6
 2.4
 2.8
 6.5
 5.7
4.6
 4.5
3.4
 3.8
3.7
 2.7
 3.2
 3.4
 5.4
4.4
 4.4
3.8
 3.9
 3.6
 4.2
4.2
21 AT1G72390 nuclear receptor coactivator 843571 At1g72390 6.9 5.3
 6.6
 144.7
 4.2
 4.7
 1.6
 4.0
 1.2
 4.9
 2.5
0.3
 3.1
2.2
 2.8
1.8
 3.4
1.2
 2.4
1.3
 3.3
2.5
 5.0
 5.5
 3.6
 4.4
 2.0
22 TAF4 TBP-associated factor 4 834330 At5g43130 6.7 7.3
 4.2
 31.2
 0.7
 2.6
 2.1
 4.0
 1.1
 5.1
 3.3
3.0
 3.8
2.7
 2.9
2.6
 0.8
0.5
 1.8
1.4
 2.9
1.1
 3.4
 4.5
 4.1
 2.9
 2.5
23 AT5G47690 binding protein 834820 At5g47690 6.6 7.2






5.6
 5.0
5.0
 5.4
5.0
 5.7
5.1
 2.4
2.0
 4.4
3.4
 4.0
3.8
 6.6
4.8
 6.5
4.8
 5.4
 5.1
 3.1
24 CHR4 chromatin remodeling 4 834510 At5g44800 6.5 6.0
 5.2
 178.6
 1.5
 2.0
 0.8
 2.3
 1.1
 4.2
 4.0
3.6
 5.0
5.0
 4.9
4.9
 3.2
2.5
 2.0
1.1
 2.6
1.9
 3.9
 4.9
 4.8
 3.2
 6.6
25 UVH3 5'-3' exonuclease family protein 822427 At3g28030 6.5 6.8
 4.4
 386.3
 2.2
 1.1
 0.9
 2.9
 1.1
 4.4
 1.4
 3.8
 2.7
 3.5
 2.6
 3.6
 4.1
 3.3
 5.1
 3.0
 1.7
26 AT1G02080 transcription regulator 839244 At1g02080 6.4 6.8
 4.3
 203.1
 1.7
 2.1
 2.1
 2.2
 -0.3
 4.4
 2.4
0.8
 4.0
3.2
 4.0
2.8
 1.1
0.6
 1.4
0.8
 2.7
2.2
 3.2
 3.1
 4.4
 3.4
 5.2
1.0
27 AT3G62900 CW-type Zinc Finger 825465 At3g62900 6.4 7.0






5.5
 3.5
3.1
 5.1
4.3
 3.2
2.9
 2.3
2.3
 3.0
2.0
 5.0
4.0
 3.8
3.1
 3.1
2.8
 3.5
2.5
 3.9
3.2
 4.8
4.0
28 TAF2 TBP-associated factor 2 843733 At1g73960 6.4 7.0
 4.0
 54.7
 2.6
 1.8
 2.1
 2.7
 2.0
 4.8
 2.7
2.7
 4.2
3.8
 2.8
2.3
 1.0
 1.8
 3.0
 3.5
 2.2
 3.6
 3.1
 4.3
29 AT1G51720 Amino acid dehydrogenase family protein 841597 At1g51720 6.4 6.5
 4.6
 12.7
 0.9
 2.6
 1.4
 2.6
 2.6
 2.5
 2.0
1.5
 2.7
1.6
 2.1
1.6
 0.2
 1.1
 0.6
 2.8
 2.7
 2.6
 2.1
 2.6
30 emb1441 zinc knuckle (CCHC-type) family protein 835056 At5g49930 6.4 6.1
 4.9
 2.8
 2.7
 3.4
 1.7
 3.6
 1.7
 3.1
 3.5
2.6
 4.5
2.5
 6.6
3.7
 1.8
 1.0
 4.5
 3.6
 3.3
 4.0
 4.9
 2.7
31 TTN7 Structural maintenance of chromosomes (SMC) family protein 817259 At2g27170 6.2 9.0
 1.8
 881.2
 0.5
 1.5
 2.1
 3.8
 1.2
 6.5
 5.9
5.7
 4.4
3.1
 6.1
5.9
 1.8
 2.0
 1.9
 5.3
 5.0
 5.0
 3.0
 6.4
1.8
32 SNL3 SIN3-like 3 839032 At1g24190 6.2 7.6
 3.1
 607.5
 1.1
 0.9
 1.6
 2.1
 0.4
 5.8
 4.1
3.7
 6.9
5.9
 4.3
3.7
 0.9
0.8
 2.6
2.2
 3.4
2.9
 8.5
5.2
 5.7
5.3
 5.5
4.1
 4.4
3.9
 6.2
1.5
33 SWI3C SWITCH/sucrose nonfermenting 3C 838774 At1g21700 6.1 5.0
 5.6
 374.8
 1.5
 1.5
 3.7
 0.3
 1.3
 4.4
 1.4
1.4
 4.2
1.9
 2.1
1.4
 2.3
1.2
 1.1
-0.1
 2.3
0.5
 0.8
 2.2
 1.4
 3.1
 2.4
2.1
34 AT3G23900 RNA recognition motif (RRM)-containing protein 821973 At3g23900 6.1 7.5
 3.1
 658.4
 0.8
 1.3
 1.0
 1.8
 1.4
 4.4
 0.8
 3.9
 2.6
 2.6
2.0
 1.1
0.4
 2.2
2.2
 2.0
 1.5
 3.4
 4.0
 2.1
35 AT5G16680 RING/FYVE/PHD zinc finger superfamily protein 831529 At5g16680 6.1 6.5
 4.1
 103.4
 3.5
 2.2
 2.1
 2.0
 1.3
 6.6
 4.0
3.4
 6.0
3.7
 3.5
3.4
 2.9
1.4
 1.5
0.9
 2.1
1.5
 5.2
3.3
 4.5
3.4
 4.8
 3.5
 3.7
2.6
36 NRB4 mediator of RNA polymerase II transcription subunit 15a-like protein 838147 At1g15780 6.1 5.7
 4.8
 139.1
 2.3
 2.2
 3.2
 1.9
 0.8
 4.4
 2.5
2.3
 3.4
2.4
 3.1
2.6
 1.6
0.9
 1.2
0.9
 1.7
1.6
 4.1
2.8
 3.2
3.2
 3.1
 4.6
 2.7
37 AT1G02990 uncharacterized protein 839380 At1g02990 6.1 6.7






5.2










38 SNL6 paired amphipathic helix Sin3-like protein 837584 At1g10450 6.0 6.4






5.1










39 AT2G26780 ARM repeat superfamily protein 817219 At2g26780 6.0 5.1
 5.3
 80.7
 1.2
 2.5
 1.4
 3.1
 0.4
 4.8
 1.7
 4.1
 2.2
 1.3
 3.3
 2.8
 5.7
 3.3
 3.2
 4.1
 3.0
1.6
40 TNO1 TGN-related, localized SYP41 interacting protein 839062 At1g24460 6.0 5.7
 4.7
 1836.8
 4.6
 1.9
 0.3
 0.4
 1.7
 4.5
 5.9
3.7
 2.7
2.7
 5.7
3.6
 2.9
 3.7
 2.1
 3.5
 3.0
 3.7
 3.8
 1.6
41 ATRX P-loop containing nucleoside triphosphate hydrolases superfamily protein 837382 At1g08600 6.0 5.1
 5.3
 38.1
 1.8
 2.8
 1.5
 2.7
 1.9
 3.9
 5.1
4.0
 3.5
2.6
 4.5
4.4
 2.6
1.4
 3.2
1.2
 3.4
2.6
 6.9
 4.6
 3.9
 4.1
 1.8
42 AT5G53440 LOW protein: zinc finger CCCH domain protein 835425 At5g53440 6.0 4.8
 5.5
 19.2
 3.0
 1.5
 2.8
 4.3
 2.0
 5.1
 3.6
2.7
 2.8
1.4
 3.9
3.9
 2.3
2.0
 1.5
0.6
 0.7
-0.0
 6.9
 3.9
 4.5
 3.9
 4.7
43 FAB1A 1-phosphatidylinositol-3-phosphate 5-kinase FAB1A 829460 At4g33240 6.0 6.0
 4.4
 40.8
 4.2
 2.8
 2.8
 2.0
 1.2
 4.3
 3.6
3.0
 2.7
1.9
 3.3
1.8
 3.5
2.9
 3.6
3.3
 4.8
4.4
 8.1
3.7
 4.4
3.4
 3.6
2.5
 2.1
1.3
 3.4
2.6
44 AT5G24740 vacuolar protein sorting-associated protein, putative (DUF1162) 832543 At5g24740 6.0 5.4
 5.0
 95.5
 1.8
 2.2
 1.1
 2.2
 0.5
 4.2
 2.1
 3.4
 3.0
 1.1
 1.9
 3.3
 3.1
 2.8
 4.2
 3.6
 2.4
45 YAK1 YAK1-like protein 1 833590 At5g35980 6.0 5.6
 4.7
 15.8
 2.8
 3.1
 1.9
 2.9
 1.9
 3.3
 1.5
1.2
 4.9
3.5
 2.8
2.5
 0.2
-0.9
 2.3
2.0
 2.0
1.5
 3.3
 3.0
 2.5
 2.4
 4.5
2.3
46 SYD P-loop containing nucleoside triphosphate hydrolases superfamily protein 817375 At2g28290 6.0 5.5
 4.8
 1159.8
 2.0
 1.0
 0.6
 1.7
 1.2
 3.7
 2.7
2.3
 4.4
3.6
 3.6
3.5
 3.0
1.8
 2.6
1.4
 5.4
4.1
 4.4
 3.8
 7.0
 5.1
 4.7
47 EMF1 embryonic flower 1 (EMF1) 831025 At5g11530 5.9 6.5
 3.7
 1818.6
 3.6
 2.1
 1.3
 0.8
 0.8
 5.4
 2.8
2.0
 5.7
4.8
 3.3
3.1
 1.9
1.5
 3.0
1.5
 2.7
1.1
 5.0
 3.1
 3.2
 1.4
48 AT5G07940 dentin sialophosphoprotein-like protein 830688 At5g07940 5.9 6.1






4.3
 3.2
3.2
 5.2
4.8
 5.3
4.2
 3.5
2.7
 2.3
1.6
 3.4
2.7
 5.4
4.3
 4.7
3.5
 6.6
5.2
 4.0
3.9
 5.1
2.5
49 AT2G25320 TRAF-like family protein 817070 At2g25320 5.9 6.2






4.5
 0.0
-0.2
 3.8
2.0
 1.5
1.0
 3.9
1.6
 2.2
2.0
 3.4
2.7
 2.9
 2.3
 4.2
 4.2
 4.2
50 AT5G23110 Zinc finger, C3HC4 type (RING finger) family protein 832375 At5g23110 5.9 5.1
 5.1
 106.0
 3.3
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