Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.4   SK2   shikimate kinase 2 
 ath-r.6   SK2   shikimate kinase 2 
 ath-m.9   SK2   shikimate kinase 2 
 ath-m.4.notissue   SK2   shikimate kinase 2 
 ath-m.4.tis   SK2   shikimate kinase 2 
 ath-m.4.str   SK2   shikimate kinase 2 
 ath-m.4.hor   SK2   shikimate kinase 2 
 ath-m.4.bio   SK2   shikimate kinase 2 
 ath-m.4.lig   SK2   shikimate kinase 2 
 ath-e.1   SK2   shikimate kinase 2 
 ath-u.4   SK1   shikimate kinase 1 
 gma-u.4   100784290   shikimate kinase 1, chloroplastic 
 gma-u.4   100797982   shikimate kinase, chloroplastic 
 ppo-u.4   7474813   shikimate kinase, chloroplastic 
 ppo-u.4   7486337   shikimate kinase 1, chloroplastic 
 mtr-u.4   120577441   shikimate kinase 1, chloroplastic 
 sly-u.4   SK   shikimate kinase precursor 
 osa-u.4   4340547   shikimate kinase 2, chloroplastic-like 
 osa-u.4   4337165   shikimate kinase 3, chloroplastic-like 
 osa-u.4   4330732   shikimate kinase 1, chloroplastic-like 

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Top 50 coexpressed genes to SK2 (ath-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 ath1230   Biosynthesis of amino acids  13 230 13.91
 ath400   Phenylalanine, tyrosine and tryptophan biosynthesis  9 52 14.18
 ath260   Glycine, serine and threonine metabolism  3 69 3.15
 ath1240   Biosynthesis of cofactors  3 236 -
 ath1200   Carbon metabolism  3 273 -

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ath:SK2 (shikimate kinase 2) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition specific* Reference

ath-u.4
for
SK2
ath-r.6
for
SK2
ath-m.9
for
SK2
ath-m.4.notissue
for
SK2
ath-m.4.tis
for
SK2
ath-m.4.str
for
SK2
ath-m.4.hor
for
SK2
ath-m.4.bio
for
SK2
ath-m.4.lig
for
SK2
ath-e.1
for
SK2
ath-u.4
for
SK1
gma-u.4
for
100784290
gma-u.4
for
100797982
ppo-u.4
for
7474813
ppo-u.4
for
7486337
mtr-u.4
for
120577441
sly-u.4
for
SK
osa-u.4
for
4340547
osa-u.4
for
4337165
osa-u.4
for
4330732
1 SOS4 pfkB-like carbohydrate kinase family protein 833763 At5g37850 7.7 7.6
 5.8
 3.7
 4.9
 2.7
 2.4
 1.5
 1.0
 2.3
 1.1
 1.4
0.5
 0.4
0.2
 -0.2
 -0.4
 0.2
 1.3
 1.3
 0.8
 0.8
2 AK-LYS1 aspartate kinase 1 831169 At5g13280 6.5 6.5
 4.7
 218.1
 1.2
 2.6
 0.9
 1.7
 2.4
 2.2
 -0.2
-0.4
 0.8
0.7
 2.6
1.1
 -0.5
-1.1
 0.9
0.3
 1.1
-0.2
 -2.0
 1.0
0.6
 0.9
-0.5
 5.2
0.9
3 AAT aspartate aminotransferase 816758 At2g22250 5.9 5.7
 4.4
 6.0
 1.2
 3.8
 2.7
 3.3
 1.3
 1.2
 1.6
 6.1
2.7
 0.8
0.8
 3.8
1.3
 5.1
3.7
 0.8
0.5
 6.9
 1.0
 3.3
 0.2
4 MEE32 dehydroquinate dehydratase, putative / shikimate dehydrogenase 819809 At3g06350 5.7 5.3
 4.5
 4.0
 1.0
 5.0
 2.2
 2.7
 0.6
 0.7
 0.7
 1.0
 0.0
 4.2
4.2
 4.5
3.6
 1.0
 6.4
 2.4
1.5
 2.4
1.2
 1.6
0.5
5 EMB1144 chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase 841307 At1g48850 5.7 5.9
 3.9
 21.1
 0.8
 3.3
 2.6
 3.4
 2.5
 1.1
 1.2
 4.0
3.8
 -0.1
-0.6
 4.8
2.3
 5.6
4.4
 2.3
 7.8
1.2
 3.9
 2.6
 2.2
6 AT2G45990 ribosomal RNA small subunit methyltransferase G 819207 At2g45990 5.6 4.4
 5.3
 77.1
 3.4
 3.3
 2.7
 -0.7
 1.4
 1.7
 0.9
 2.3
-0.5
 1.1
0.6
 0.8
 -0.3
 1.3
-1.1
 1.3
 0.8
 0.0
 0.8
7 AT5G66120 3-dehydroquinate synthase 836744 At5g66120 5.5 5.1
 4.4
 27.9
 1.6
 1.4
 2.4
 2.2
 3.6
 -1.2
 2.4
 2.7
1.5
 0.5
0.1
 4.8
 3.3
 2.0
 7.5
 2.0
 1.5
 2.1
8 TRP1 tryptophan biosynthesis 1 831666 At5g17990 5.5 5.2
 4.3
 264.5
 3.6
 0.6
 3.6
 2.6
 0.6
 1.0
 -0.7
 -0.4
 0.4
 2.0
 1.3
 0.2
 1.3
0.9
 2.3
 -0.5
 1.7
9 AT1G06550 ATP-dependent caseinolytic (Clp) protease/crotonase family protein 837166 At1g06550 5.5 5.3
 4.1
 3.5
 0.8
 3.8
 2.0
 2.4
 2.9
 1.2
 2.7
 5.0
5.0
 -0.1
-1.0
 1.2
 5.9
 2.9
 6.5
 2.0
 3.0
 0.4
10 PGL34 plastoglobulin 34kD 824970 At3g58010 5.3 4.7
 4.4
 7200.8
 1.4
 0.2
 1.0
 -1.4
 -1.6
 1.4
 3.5
1.2
 1.8
1.5
 2.6
0.6
 0.3
0.0
 1.1
0.3
 0.7
 0.9
0.4
 0.1
 0.5
 0.9
11 CM1 chorismate mutase 1 822573 At3g29200 5.2 4.7
 4.2
 26.5
 0.4
 2.7
 2.1
 1.5
 1.2
 0.3
 1.3
-0.1
 4.4
3.3
 0.6
0.2
 3.0
 4.6
 2.7
-0.3
 6.6
 2.7
 1.9
 1.6
12 AT5G24760 GroES-like zinc-binding dehydrogenase family protein 832545 At5g24760 5.1 5.0
 3.9
 20.5
 0.6
 3.6
 3.7
 2.7
 0.4
 0.1
 1.8
 5.0
 1.7
 4.8
 6.1
 1.9
 6.5
 2.9
 2.8
 1.1
13 PPa6 pyrophosphorylase 6 830824 At5g09650 5.1 4.4
 4.3
 937.1
 2.7
 1.9
 0.5
 -0.6
 1.5
 1.1
 -0.9
 1.3
-0.2
 1.0
0.4
 0.4
0.0
 0.6
-0.3
 -0.0
 -0.4
-1.0
 0.2
 -0.3
 1.8
14 AT1G23220 Dynein light chain type 1 family protein 838931 At1g23220 5.0 4.0
 4.7
 47.8
 0.8
 2.9
 2.0
 4.8
 2.0
 1.5
 0.4
 0.7
0.2
 1.6
0.7
 -1.4
 -0.6
 0.5
-1.3
 1.3
 -0.1
-0.9
 0.1
-0.2
 -0.1
-0.8
15 AIG2 AIG2-like (avirulence induced gene) family protein 822529 At3g28930 4.9 4.5
 4.0
 1233.5
 1.5
 0.3
 2.2
 1.9
 -1.3
 1.6
 0.7
-0.0








16 AT2G34310 uncharacterized protein 817992 At2g34310 4.9 4.3
 4.1
 434.9
 1.5
 3.0
 3.0
 -0.6
 1.5
 2.8
 2.1
0.0
 0.7
0.3
 0.7
0.6
 1.6
1.0
 0.3
0.2
 0.3
-0.2
 -0.9


17 AT1G14310 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 837992 At1g14310 4.8 3.5
 4.8
 810.1
 3.1
 1.5
 1.9
 -1.6
 1.4
 1.7
 1.2
 0.5
 2.5
 1.5
 0.0
 1.0
 0.5
 0.4
 0.1
 2.8
18 TSA1 tryptophan synthase alpha chain 824629 At3g54640 4.8 3.9
 4.4
 131.4
 2.5
 1.5
 2.4
 3.3
 -0.1
 0.5
 0.6
-0.4
 1.1
0.4
 1.6
1.0
 0.6
-0.4
 0.5
-0.0
 3.1
 0.8
 3.8
1.4
 0.5
0.4
 2.0
1.0
19 AT2G24860 DnaJ/Hsp40 cysteine-rich domain superfamily protein 817023 At2g24860 4.8 4.3
 4.1
 1309.2
 0.6
 0.5
 4.1
 2.8
 0.5
 2.2
 1.4
 2.0
1.2
 0.7
0.5
 0.7
0.3
 1.0
0.4
 1.3
 1.1
 2.4
 -0.3
 1.5
20 RbcX2 Chaperonin-like RbcX protein 832106 At5g19855 4.8 4.0
 4.2
 1584.0
 0.9
 0.6
 1.9
 1.4
 2.3
 2.7
 1.5
 1.6
1.1
 0.9
-0.3
 0.7
-0.2
 0.0
0.0
 -0.0
 1.2
1.2
 0.4
-0.7
 0.2
-1.3
 1.1
0.3
21 AT2G04400 Aldolase-type TIM barrel family protein 814980 At2g04400 4.7 4.1
 4.0
 287.0
 2.1
 0.8
 3.3
 2.7
 2.3
 0.8
 0.9
0.5
 0.8
-0.3
 1.5
1.2
 0.0
 -0.5
 0.1
 1.6
 0.0
 -0.7
 0.7
22 AT5G44720 Molybdenum cofactor sulfurase family protein 834501 At5g44720 4.7 4.1
 4.0
 56.2
 1.4
 2.0
 3.3
 2.3
 -0.2
 1.4
 1.5
1.2
 0.9
0.3
 2.5
-0.4
 -0.8
 -1.2
 0.8
0.4
 -0.1
 0.1
-0.2
 -0.1
-0.4
 1.0
-0.8
23 OMR1 L-O-methylthreonine resistant 1 820166 At3g10050 4.7 3.8
 4.3
 700.0
 0.9
 2.2
 0.9
 1.3
 3.6
 1.9
 -0.5
 -0.7
-1.0
 1.1
0.8
 -1.0
 -0.4
 0.9
 0.2
-2.2
 0.7
 0.3
 -0.5
24 CRL2 NAD(P)-binding Rossmann-fold superfamily protein 817926 At2g33600 4.7 3.9
 4.2
 1883.4
 1.5
 0.8
 1.6
 2.2
 0.7
 -0.2
 3.9
1.4
 -0.2
 -0.7
 1.1
-2.1
 -0.6
-0.7
 0.7
-0.0
 0.7
 0.8
-0.3
 0.5
0.2
 1.2
0.5
25 AT1G74640 alpha/beta-Hydrolases superfamily protein 843803 At1g74640 4.6 4.3
 3.7
 1233.8
 1.4
 0.3
 0.8
 0.8
 2.3
 0.8
 1.3
 0.5
-1.1
 -0.1
-0.4
 -0.7
 0.0
 0.7
 1.4
 -0.4
 -0.0
 0.6
26 AT5G64460 Phosphoglycerate mutase family protein 836567 At5g64460 4.6 4.5
 3.4
 1149.9
 2.5
 2.8
 1.5
 -1.2
 0.8
 3.4
 1.5
0.9
 1.7
1.1
 3.2
2.0
 1.4
0.9
 1.1
0.3
 1.5
1.4
 1.1
 1.0
 -1.0
 -0.9
27 AT4G10030 alpha/beta-Hydrolases superfamily protein 826594 At4g10030 4.6 3.8
 4.2
 1897.9
 1.4
 1.0
 3.2
 0.4
 -1.3
 1.9
 1.3
 3.0
1.9
 2.0
1.8
 0.5
 1.2
 0.3
 -0.2
 1.9
 1.1
 2.7
28 DHS1 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 830159 At4g39980 4.6 3.3
 4.6
 378.6
 1.5
 0.1
 1.6
 2.1
 3.1
 -1.0
 1.1
-0.5
 1.7
-0.2
 0.9
-0.0
 3.8
2.6
 5.8
3.7
 3.1
0.6
 6.4
1.3
 3.5
1.8
 4.4
3.2
 0.9
0.7
29 RAD52-2 cobalt ion-binding protein 834838 At5g47870 4.5 4.4
 3.4
 61.8
 0.5
 2.2
 2.4
 1.5
 3.2
 0.5
 2.8
 0.3
 0.3
 4.2
4.0
 3.3
2.5
 1.2
 2.3
1.2
 1.9
-0.5
 2.1
0.8
 1.0
-0.4
30 CYSC1 cysteine synthase C1 825317 At3g61440 4.5 5.2
 2.6
 53.7
 3.9
 3.4
 0.8
 1.8
 -2.2
 1.0
 -0.8
 1.4
0.9
 -0.3
-0.4
 1.2
0.6
 -0.2
-0.2
 1.3
 4.1
0.2
 -0.6
 -0.6
 1.2
31 SRX sulfiredoxin 840004 At1g31170 4.5 3.9
 3.8
 2157.9
 1.1
 2.2
 1.7
 0.2
 1.1
 1.8
 1.3
 4.3
 0.4
 0.4
 -1.1
-1.1
 -1.4
 -0.5
 0.1
32 AT5G63060 Sec14p-like phosphatidylinositol transfer family protein 836426 At5g63060 4.4 3.6
 4.1
 728.6
 1.1
 2.7
 1.5
 -1.0
 1.5
 2.4
 0.9
 1.6
0.6
 1.5
0.6
 0.2
 -0.1
 0.3
 1.0
 0.7
 -1.2
 -0.1
33 PPOX pyridoxin (pyrodoxamine) 5'-phosphate oxidase 835061 At5g49970 4.4 3.9
 3.7
 290.1
 1.6
 3.0
 1.3
 -1.8
 2.3
 0.5
 0.3
 -0.1
 -1.2
 -0.1
 -0.8
 -0.6
 -0.5
 -0.9
 -0.7
 0.6
34 AT3G27050 plant/protein 822323 At3g27050 4.4 4.4
 3.2
 496.1
 2.0
 2.9
 0.6
 -1.1
 1.2
 2.9
 0.4
 0.6
0.3
 1.9
0.7
 1.4
 -0.1
 0.3
-0.7
 0.4
 0.6
35 CBR NADH:cytochrome B5 reductase 1 831645 At5g17770 4.4 4.6
 3.0
 171.6
 0.6
 1.8
 2.0
 3.3
 -1.4
 0.2
 0.3
 5.2
2.2
 1.4
0.8
 4.9
1.3
 4.4
0.6
 2.6
1.7
 6.3
 2.1
-0.6
 1.4
-0.3
 0.9
0.3
36 AMK2 adenosine monophosphate kinase 834835 At5g47840 4.4 4.2
 3.4
 4863.1
 1.5
 1.5
 0.1
 -1.7
 1.4
 2.6
 0.2
 0.7
 1.5
 1.9
0.4
 0.5
-0.5
 1.2
 1.1
 -0.7
 -0.3
 0.9
37 AT3G13070 CBS domain-containing protein / transporter associated domain-containing protein 820495 At3g13070 4.3 4.1
 3.4
 120.3
 3.2
 1.7
 1.6
 0.9
 1.3
 0.7
 -0.5
-1.4
 -0.8
 -0.9
 3.2
 0.5
 1.1
 2.2
 0.7
 0.4
 1.0
38 SRT2 sirtuin 2 830782 At5g09230 4.3 4.3
 3.2
 77.9
 0.7
 4.2
 2.2
 -0.3
 1.8
 1.8
 0.8
 2.4
1.6
 0.9
-0.4
 2.9
 -0.2
 1.1
 1.4
 0.5
 0.8
 0.7
39 AT2G03390 uvrB/uvrC motif-containing protein 814868 At2g03390 4.3 3.8
 3.6
 505.1
 1.4
 1.8
 2.1
 -0.8
 2.3
 1.9
 1.0
 1.0
0.8
 0.5
0.0
 -0.6
 -0.1
 0.7
 0.6
 0.4
-0.2
 0.0
-0.8
 0.9
0.5
40 RABG3c RAB GTPase homolog G3C 820855 At3g16100 4.3 4.0
 3.4
 271.6
 1.5
 2.1
 1.1
 -0.8
 1.5
 0.1
 2.5
2.0
 2.6
2.1
 1.6
1.5
 1.0
0.7
 1.0
0.7
 3.1
0.7
 1.4
1.1
 1.1
 1.3
1.0
 0.1
-0.6
41 HISN5B HISTIDINE BIOSYNTHESIS 5B 827149 At4g14910 4.2 3.4
 3.9
 2247.3
 1.4
 2.6
 1.7
 -1.5
 2.3
 0.8
 1.1
1.0
 0.1
 0.5
 0.7
-0.3
 0.1
-1.5
 1.3
 0.8
 -0.9
 -1.6
 0.3
42 AT5G50370 Adenylate kinase family protein 835104 At5g50370 4.2 4.0
 3.3
 1459.0
 0.6
 0.6
 2.1
 0.5
 -1.1
 1.3
 0.5
-0.8
 0.7
-0.4
 1.7
1.2
 3.7
1.0
 3.5
0.4
 0.0
 6.3
-0.9
 1.5
0.5
 2.1
0.4
 -0.4
-0.5
43 AT5G45170 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 834553 At5g45170 4.2 3.6
 3.7
 846.1
 2.5
 2.5
 1.3
 -1.9
 1.8
 -0.0
 1.6
 -1.2
-1.7
 0.6
0.6
 0.5
 0.5
 0.0
 0.6
 -0.0
 0.0
 1.7
44 CB5-B cytochrome B5 isoform B 817832 At2g32720 4.2 4.4
 2.9
 41.4
 0.7
 2.9
 0.8
 0.6
 0.3
 2.8
 0.7
0.1
 5.5
3.1
 2.2
1.1
 4.2
2.7
 5.3
2.4
 3.2
1.6
 4.6
4.2
 0.7
0.7
 2.1
1.2
 1.5
1.3
45 AT3G16220 Putative eukaryotic LigT 820868 At3g16220 4.2 3.5
 3.7
 218.4
 1.3
 3.0
 1.1
 1.8
 2.8
 0.6
 0.8
-0.3
 -0.2
 2.0
 1.4
 -0.6
 0.2
 2.7
0.3
 0.2
0.0
 2.1
0.6
 2.6
-0.1
46 AT1G77930 Chaperone DnaJ-domain superfamily protein 844128 At1g77930 4.2 3.7
 3.5
 1672.6
 0.7
 2.2
 2.2
 -0.5
 1.6
 1.0
 2.3
 1.9
 1.3
 -0.1
 -0.3
 0.7
 0.8
 -0.5
 -0.2
 0.0
47 AT5G14970 seed maturation-like protein 831349 At5g14970 4.1 3.2
 4.0
 5813.8
 1.5
 0.2
 1.9
 -1.3
 0.1
 2.4
 1.6
 0.0
-0.1
 0.6
-0.2

0.7
 0.0


48 AT3G23570 alpha/beta-Hydrolases superfamily protein 821936 At3g23570 4.1 3.6
 3.6
 170.2
 1.1
 2.3
 2.6
 2.0
 -0.6
 1.7
 1.4
-0.2
 1.5
1.4
 2.1
1.9
 1.5
0.2
 -0.2
-0.4
 1.2
1.2
 1.6
0.3
 -0.2
-0.2
 1.9
0.8
 -0.4
-1.0
49 MAMI membrane-associated mannitol-induced 835498 At5g54110 4.1 4.2
 3.0
 652.5
 0.9
 2.4
 1.3
 1.2
 0.2
 3.3
 1.5
1.1
 1.2
1.1
 2.1
1.8
 3.2
1.2
 2.2
1.0
 2.6
2.4
 3.1
1.5
 -1.0
 -0.5
 -0.3
50 AT1G01490 Heavy metal transport/detoxification superfamily protein 839440 At1g01490 4.1 4.4
 2.7
 38.0
 0.6
 2.5
 1.1
 2.1
 -1.7
 0.0
 -0.1
 3.3
2.8
 1.4
0.9
 1.1
-0.0
 0.4
0.2
 0.8
0.7
 0.7
-0.1
 1.1
-0.2
 0.9
-0.4
 1.3
-1.2
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