Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.4   101251012   nucleoid-associated protein At4g30620, chloroplastic 
 sly-r.5   101251012   nucleoid-associated protein At4g30620, chloroplastic 
 sly-m.5   101251012   nucleoid-associated protein At4g30620, chloroplastic 
 sly-u.4   101266487   nucleoid-associated protein At4g30620, chloroplastic-like 
 ath-u.4   AT4G30620   Putative BCR, YbaB family COG0718 
 ath-u.4   AT2G24020   Putative BCR, YbaB family COG0718 
 gma-u.4   100782796   nucleoid-associated protein At4g30620, chloroplastic 
 gma-u.4   100305795   uncharacterized LOC100305795 
 ppo-u.4   7489439   nucleoid-associated protein At2g24020, chloroplastic 
 mtr-u.4   25480982   nucleoid-associated protein At4g30620, chloroplastic 
 mtr-u.4   11442689   nucleoid-associated protein At4g30620, chloroplastic 
 osa-u.4   4328507   nucleoid-associated protein At2g24020, chloroplastic 

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Top 50 coexpressed genes to 101251012 (sly-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 sly470   D-Amino acid metabolism  1 7 -
 sly290   Valine, leucine and isoleucine biosynthesis  1 26 -
 sly480   Glutathione metabolism  2 118 -
 sly270   Cysteine and methionine metabolism  1 119 -
 sly3010   Ribosome  4 365 -

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sly:LOC101251012 (nucleoid-associated protein At4g30620, chloroplastic) External Links;


Show/Hide Columns:        
Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.4
for
101251012
sly-r.5
for
101251012
sly-m.5
for
101251012
sly-u.4
for
101266487
ath-u.4
for
AT4G30620
ath-u.4
for
AT2G24020
gma-u.4
for
100782796
gma-u.4
for
100305795
ppo-u.4
for
7489439
mtr-u.4
for
25480982
mtr-u.4
for
11442689
osa-u.4
for
4328507
1 LOC101250715 protein DMR6-LIKE OXYGENASE 2 101250715 10.0 9.1
 4.9
 1.7
-0.3

1.3
0.7
 0.7
0.4
 -0.1
-0.8
 0.1
-0.1
 0.9
0.4
 1.2
2 LOC101262041 uncharacterized LOC101262041 101262041 7.0 5.4
 4.4
 2.6
 2.3
0.8
 3.4
1.1
 1.2
-0.9
 1.1
-0.6
 1.7
1.3
 1.9
 -2.0
 0.5
3 LOC101265835 monothiol glutaredoxin-S10 101265835 6.7 4.3
 5.1
 4.8
 1.9
 2.7
 2.5
2.2
 3.6
2.6
 1.5
 1.6
 1.5
 2.8
4 LOC101252574 probable acetyltransferase NATA1-like 101252574 6.5 6.8
1.2
-1.4
 0.3
0.1
 0.3
0.2
 2.7
 3.3
 1.2
-1.1
 1.2
 0.2
 0.6
5 MSRA peptide methionine sulfoxide reductase 101253577 6.2 6.1
 2.6
 2.4
-0.2
 1.2
-1.9
 2.5
-0.8
 1.2
0.9
 1.7
0.4
 1.3
1.1
 1.3
0.7
 2.7
0.6
 1.1
-0.1
6 LOC101250139 uncharacterized LOC101250139 101250139 6.0 6.0
1.6
0.9
 0.2
-2.1
 1.5
-0.3
 0.9
0.1
 1.1
-0.1
 -1.0
-1.5
 0.9
 1.2
 0.0
7 LOC101244248 glutaredoxin 101244248 5.8 4.7
 3.3
 3.1
 1.2
 1.6
 2.2
1.7
 4.2
3.1
 4.6
 2.2
 4.2
 0.2
8 LOC101251324 ferredoxin-thioredoxin reductase, variable chain 101251324 5.7 4.1
 3.9
 5.4
 1.0
0.9
 2.5
0.9
 3.5
3.1
 4.6
4.5
 1.4
0.6
 1.8
 1.2
 2.2
0.2
9 ISPF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 101246365 5.7 4.0
 3.9
 3.8
 0.7
 2.9
 1.8
 3.1
 1.9
1.5
 1.7
 2.1
 0.8
10 LOC101263903 bifunctional nuclease 2 101263903 5.6 3.9
 3.8
 2.1
1.7
 0.4
-0.6
 0.4
-0.1
 3.2
 1.6
 0.1
 0.1
0.0
 2.6
0.0
 0.4
11 HrBP1 harpin binding protein 1 543909 5.6 4.3
 3.5
 3.0
 0.4
 1.9
 0.0
0.0
 0.8
-0.3
 1.5
 0.6
 0.7
 -0.2
12 LOC101252938 plastid-specific 50S ribosomal protein 5-like 101252938 5.5 3.1
 4.5
 4.5
0.9
 3.1
 6.8
 3.9
1.7
 5.8
3.2
 3.0


13 LOC101259284 uncharacterized LOC101259284 101259284 5.4 5.3
2.5
 3.1
 4.6
 2.3
1.2
 2.7
2.1
 3.1
 2.6
 2.6
 2.7
14 LOC101261060 cell division protein FtsZ homolog 2-1, chloroplastic-like 101261060 5.3 5.1
4.3
3.7
 1.3
0.4
 4.5
3.0
 3.0
2.0
 3.0
1.9
 3.8
2.3
 2.4
1.9
 0.9
0.9
 1.1
0.3
15 LOC101262213 fruit protein pKIWI502 101262213 5.2 3.8
 3.5
 4.4
 1.3
 2.2
 1.9
0.6
 3.8
0.6
 3.7
0.1
 1.4
 1.0
 4.2
16 clpP2 Clp protease 2 proteolytic subunit 544244 5.1 2.7
 4.4
 6.1
 1.0
 3.1
 3.2
2.6
 4.8
3.6
 3.4
3.2
 3.8
2.4
 4.8
1.9
 4.0
17 LOC101261433 50S ribosomal protein L24, chloroplastic 101261433 5.1 4.1
 3.1
 4.1
 3.3
 8.7
 3.8
3.6
 6.8
5.6
 3.5
 2.4
 4.5
 4.2
18 LOC101260060 uncharacterized LOC101260060 101260060 5.1 4.5
1.3
 0.3
 1.6
 1.6
0.9
 2.0
1.7
 2.0
 3.5
 2.5
 -0.0
19 LOC101268824 surface protein 101268824 5.0 3.6
 3.4








20 LOC100191113 D-cysteine desulfhydrase 100191113 5.0 3.9
 3.0
 2.1
 -0.5
 0.3
 0.1
 1.5
 0.7
 1.8
 1.2
 1.3
21 LOC101259221 soluble starch synthase 1, chloroplastic/amyloplastic 101259221 4.9 4.2
 2.7
 4.6
 -0.9
 1.5
 -0.7
-1.4
 -0.5
-1.4
 0.4
 0.8
 1.4
 -1.2
22 LOC101248896 probable phospholipid hydroperoxide glutathione peroxidase 101248896 4.9 3.5
 3.3
 2.6
2.2
 1.3
1.2
 1.6
1.2
 3.2
0.8
 3.6
-0.3
 2.6
2.1
 1.9
0.3
 3.2
1.3
 0.6
0.6
23 LOC101247247 protein ORANGE-LIKE, chloroplastic 101247247 4.9 4.7
 2.2
 2.1
 0.9
 1.5
 2.2
1.3
 3.5
1.7
 3.1
 1.0
 1.5
 2.5
24 LOC104644379 peroxiredoxin-2E-2, chloroplastic 104644379 4.9 3.3
 3.4
 3.4
 2.0
 3.6
 1.1
 2.2
 2.8
 0.2
 1.6
 1.7
-0.5
25 LOC101255031 uncharacterized LOC101255031 101255031 4.8 3.1
 3.7
 2.2
-0.1
 -1.5
 -0.5
 0.7
 1.5
 2.2
 -0.5
 2.4
 0.0
-0.3
26 LOC101259703 14 kDa zinc-binding protein 101259703 4.8 3.2
 3.5
 2.3
-0.5
 2.0
-0.7
 3.8
0.1
 2.1
-0.1
 3.6
0.7
 5.4
2.0
 1.4
-0.3
 3.4
1.0
 3.9
1.2
27 LOC101249071 protein CutA, chloroplastic 101249071 4.8 5.0
 1.8
 0.3
 -0.6
 1.1
 1.2
0.2
 1.5
-0.3
 -1.1
 0.8
 0.8
 0.7
28 LOC101264001 uncharacterized protein At4g37920 101264001 4.8 3.9
 2.8
 3.0
 1.2
 3.9
 0.7
 0.4
 4.1
1.8
 2.1
 1.6
 1.9
29 GRX1 GRX1 protein 100505458 4.8 2.9
 3.8
 2.7
 2.6
 3.5
 3.5
2.8
 3.7
2.7
 3.3
 1.4
 2.5
 4.6
30 UBC3 ubiquitin conjugating enzyme 100301932 4.8 3.2
 3.5
 3.4
1.5
 -0.1
-0.7
 0.8
-0.1
 2.2
2.0
 1.8
1.8
 1.0
0.8
 0.8
0.8
 2.8
1.7
 1.0
0.4
31 LOC101267611 calvin cycle protein CP12-1, chloroplastic 101267611 4.8 4.4
2.6
1.8
 1.4
-0.6
 0.9
-0.4
 1.9
0.0
 1.8
0.8
 1.2
0.6
 0.2
0.1
 3.7
1.9
 0.6
-0.1
32 LOC101244639 50S ribosomal protein L27 101244639 4.7 2.9
 3.7
 4.7
 4.0
 7.7
 3.6
3.0
 6.9
4.3
 4.5
 1.8
 3.4
 3.2
33 LOC101255295 50S ribosomal protein L15, chloroplastic 101255295 4.7 2.2
 4.3
 5.5
 3.9
 8.9
 3.2
 5.2
 4.3
1.7
 2.5
 5.1
 2.9
34 LOC101267671 DAG protein, chloroplastic 101267671 4.7 2.4
 4.1
 6.5
 6.3
-0.0
 4.2
-0.7
 4.1
3.6
 5.3
4.8
 3.2
1.3
 2.6
-0.6
 4.4
-0.7
 1.4
35 LOC101264913 uncharacterized LOC101264913 101264913 4.6 4.4
0.8
 -0.3
 1.5
 0.3
0.3
 0.7
0.5
 1.7
 0.3
 1.5
 0.3
36 LOC101261350 ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 101261350 4.6 2.9
 3.5
 4.7
 2.1
 6.4
 5.2
4.7
 5.2
4.2
 4.3
 1.3
 3.5
 4.3
37 LOC101252988 iron-sulfur assembly protein IscA, chloroplastic 101252988 4.6 3.0
 3.5
 3.7
 -0.2
 1.7
 2.5
1.4
 2.1
1.2
 1.9
1.4
 1.7
 3.0
 -0.1
38 LOC101268336 ferredoxin-thioredoxin reductase catalytic chain, chloroplastic 101268336 4.6 4.0
 2.4
 3.6
 2.8
 4.2
 1.3
1.3
 3.0
2.7
 1.3
 2.3
 2.3
 1.4
39 LOC101262349 nifU-like protein 1, chloroplastic 101262349 4.6 2.7
 3.7
 3.1
 1.9
 3.0
 3.0
 3.9
 2.6
1.6
 0.9
 2.0
 0.2
40 LOC101265853 probable glutathione S-transferase 101265853 4.6 4.4
1.8
0.8
 0.7
0.7
 0.6
0.5
 1.3
0.7
 1.8
0.9
 0.7
0.4
 1.2
0.5
 1.7
1.5
 0.6
0.2
41 LOC101262600 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 101262600 4.6 3.7
 2.7
 4.6
 4.9
 7.3
 5.9
3.4
 5.5
3.5
 5.7
 2.9
 3.6
 2.6
1.5
42 LOC101244648 50S ribosomal protein L29, chloroplastic-like 101244648 4.6 2.7
 3.7
 3.8
3.7
 2.3
 5.8
 3.8
2.7
 5.4
5.1
 5.0
1.3
 0.2
 3.9
 3.5
43 LOC101252251 putative low molecular weight protein-tyrosine-phosphatase slr0328 101252251 4.6 4.0
2.4
 1.7
 4.4
 1.5
0.7
 3.5
0.7
 0.7
0.1
 2.6
 1.4
 1.6
44 LOC101267675 CBS domain-containing protein CBSX1, chloroplastic 101267675 4.6 4.0
3.7
1.5
 0.9
0.6
 1.6
1.2
 3.1
2.4
 2.5
2.2
 2.5
1.0
 1.4
0.6
 2.9
0.2
 0.2
0.1
45 LOC543966 clp-like energy-dependent protease 543966 4.5 3.3
 3.0
 4.7
 2.0
 7.5
 4.1
2.5
 5.8
3.9
 7.0
1.7
 1.7
 2.7
 4.1
46 pds phytoene desaturase 544073 4.5 4.1
 2.2
 2.9
 -0.4
 3.0
 2.9
2.5
 2.9
2.0
 0.7
 3.5
 2.3
 0.9
47 LOC101256043 ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic 101256043 4.5 3.3
 3.0
 2.8
 1.0
 3.9
 5.0
3.9
 4.4
2.7
 2.1
 1.3
 2.4
 1.2
48 LOC101247914 3-isopropylmalate dehydrogenase, chloroplastic 101247914 4.5 4.1
2.9
 2.3
1.6
 3.1
2.5
 1.9
1.4
 3.1
2.3
 4.1
 1.4
 2.1
 2.5
49 LOC101261866 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic 101261866 4.5 3.4
 2.8
 5.4
 2.2
 4.2
 6.2
4.8
 6.0
5.2
 6.2
 1.2
 3.0
 3.5
50 LOC101248838 30S ribosomal protein S21, chloroplastic 101248838 4.5 2.2
 4.1








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