cis; CTCTCTC

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
TCTCTCTCT CTRMCAMV35S [ref]

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of CTCTCTC

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of CTCTCTC.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.47At3g61830transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related ARF
0.46At2g47260WRKY family transcription factor WRKY
0.45At1g19850transcription factor MONOPTEROS (MP) / auxin-responsive protein (IAA24) / auxin response factor 5 (ARF5) ((MP)) ARF
-0.44At4g28270zinc finger (C3HC4-type RING finger) family protein C3H
0.44At2g35530bZIP transcription factor family protein bZIP
0.44At1g01260basic helix-loop-helix (bHLH) family protein BHLH
0.43At2g22900galactosyl transferase GMA12/MNN10 family protein CAMTA
0.42At5g12330lateral root primordium 1 (LRP1) ((LRP1)) C2H2
0.41At1g08000zinc finger (GATA type) family protein C2C2-Gata
-0.41At5g61420myb family transcription factor (MYB28) ((MYB28)) MYB
0.41At5g60200Dof-type zinc finger domain-containing protein C2C2-Dof
-0.41At2g15580zinc finger (C3HC4-type RING finger) family protein C3H
-0.40At5g07580ethylene-responsive element-binding family protein AP2-EREBP
-0.40At3g46130myb family transcription factor (MYB48) ((MYB111)) MYB

link to other 304 cis elements in ATTED

similar seq.
←CTCTCTC→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; GAGAGAG
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
CTCTCTC1.000.0674
TCTCTCT0.920.0746
CTCTCTT0.710.0717