cis; GGCCGAC

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
 RCCGAC DRECRTCOREAT [ref] [ref] [ref] [ref] [ref]
  CCGAC LTRECOREATCOR15 [ref] [ref] [ref] [ref]

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of GGCCGAC

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of GGCCGAC.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
-0.42At1g35460basic helix-loop-helix (bHLH) family protein BHLH
-0.41At3g02830zinc finger (CCCH-type) family protein ((ZFN1)) C2H2
-0.40At2g21320zinc finger (B-box type) family protein C2C2-CO-like

link to other 304 cis elements in ATTED

similar seq.
←GGCCGAC→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; GTCGGCC
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
GGCCGAC1.000.07143
ATGTCGG0.620.07111
GTCGGTA0.610.06189
GCCGACA0.600.08121
GTCGGCA0.600.07186