cis; GCCGACC

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
RCCGAC  DRECRTCOREAT [ref] [ref] [ref] [ref] [ref]
 CCGAC  LTRECOREATCOR15 [ref] [ref] [ref] [ref]

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of GCCGACC

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of GCCGACC.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.52At2g46830myb-related transcription factor (CCA1) ((CCA1)) MYB-related
0.49At5g57660zinc finger (B-box type) family protein C2C2-CO-like
0.48At3g47500Dof-type zinc finger domain-containing protein C2C2-Dof
0.42At5g15850zinc finger protein CONSTANS-LIKE 1 (COL1) ((COL1)) C2C2-CO-like
0.41At5g62430Dof-type zinc finger domain-containing protein C2C2-Dof
0.40At5g60850Dof-type zinc finger domain-containing protein ((OBP4)) C2C2-Dof

link to other 304 cis elements in ATTED

similar seq.
←GCCGACC→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; GGTCGGC
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
GCCGACC1.000.0781
CGCCACG0.780.06129
AGACACG0.770.07112
TACGTGT0.770.0698
CCGTAGC0.770.07189
CACGTGT0.760.1292
TCGACAC0.750.0774
CGTGTCC0.750.0882
CCACCTG0.750.08134
AACACGT0.730.0794