cis; CGTGTCC

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
  ACGCGTGTCCTC ABRECE3HVA1 [ref] [ref] [ref]
CGCCACGTGTCC   ABREBNNAPA [ref] [ref] [ref]

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of CGTGTCC

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of CGTGTCC.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.70At4g27410no apical meristem (NAM) family protein (RD26) ((RD26)) NAC
0.66At1g52890no apical meristem (NAM) family protein NAC
0.66At1g77450no apical meristem (NAM) family protein NAC
0.65At2g46680homeobox-leucine zipper protein 7 (HB-7) / HD-ZIP transcription factor 7 ((ATHB-7)) Homeobox
0.64At1g01720no apical meristem (NAM) family protein ((ATAF1)) NAC
0.64At3g61890homeobox-leucine zipper protein 12 (HB-12) / HD-ZIP transcription factor 12 ((ATHB-12)) Homeobox
0.60At3g19580zinc finger (C2H2 type) protein 2 (AZF2) ((AZF2)) C2H2
0.60At2g46270G-box binding factor 3 (GBF3) ((GBF3)) bZIP
0.58At4g21440myb family transcription factor (MYB102) MYB
0.57At5g04340zinc finger (C2H2 type) family protein ((C2H2)) C2H2
0.54At4g05100myb family transcription factor (MYB74) MYB
0.53At5g12840CCAAT-binding transcription factor (CBF-B/NF-YA) family protein ((HAP2A)) CCAAT-HAP2
0.52At3g15210ethylene-responsive element-binding factor 4 (ERF4) ((ATERF4, RAP2.5)) AP2-EREBP
0.52At5g63790no apical meristem (NAM) family protein NAC
0.52At1g48000myb family transcription factor ((MYB112)) MYB

link to other 304 cis elements in ATTED

similar seq.
←CGTGTCC→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; GGACACG
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
CGTGTCC1.000.0882
ACGTGTC0.900.1184
CACGTGT0.890.1292
TCGACAC0.860.0774
ACACGTG0.860.1162
CGTGTCA0.840.0889
GACACGT0.830.0976
AGACACG0.830.07112
CGCCACG0.790.06129
AACACGT0.790.0794