[←][→] ath   AT1G75660 Gene
functional annotation
Function   5'-3' exoribonuclease 3  
GO BP
GO:0010587 [list] [network] miRNA catabolic process  (6 genes)  IMP  
GO:0000967 [list] [network] rRNA 5'-end processing  (7 genes)  IMP  
GO:0060149 [list] [network] negative regulation of posttranscriptional gene silencing  (8 genes)  IMP  
GO:0071035 [list] [network] nuclear polyadenylation-dependent rRNA catabolic process  (9 genes)  IMP  
GO:0006397 [list] [network] mRNA processing  (376 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA IMP ISM  
GO MF
GO:0004534 [list] [network] 5'-3' exoribonuclease activity  (5 genes)  IDA IGI  
GO:0008270 [list] [network] zinc ion binding  (554 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (4187 genes)  IEA  
KEGG ath03008 [list] [network] Ribosome biogenesis in eukaryotes (98 genes)
ath03018 [list] [network] RNA degradation (113 genes)
Protein NP_565114.1 
BLAST NP_565114.1 
Orthologous [Ortholog page] XRN2 (ath)  LOC4324952 (osa)  LOC7493956 (ppo)  LOC11445985 (mtr)  LOC100253568 (vvi)  LOC100260845 (vvi)  LOC100501093 (zma)  LOC100783068 (gma)  LOC100785683 (gma)  LOC100817163 (gma)  LOC101248085 (sly)  LOC101258556 (sly)  LOC103649964 (zma)  LOC103654383 (zma)  LOC103828020 (bra)  LOC103832011 (bra)  LOC103852968 (bra)  LOC112416443 (mtr)  LOC112418725 (mtr)  LOC112421174 (mtr) 
Subcellular
localization
wolf
cyto 6,  nucl 4  (predict for NP_565114.1)
Subcellular
localization
TargetP
scret 6,  other 5  (predict for NP_565114.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
ath04120 Ubiquitin mediated proteolysis 2
Genes directly connected with XRN3 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
9.4 AT1G33680 KH domain-containing protein [detail] 840259
7.7 KAK HECT ubiquitin protein ligase family protein KAK [detail] 830017
7.4 AT3G50370 hypothetical protein [detail] 824199
6.8 EMB2763 ribonuclease II family protein [detail] 816257
5.9 AGO1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase [detail] 841262
4.9 AT4G01860 Transducin family protein / WD-40 repeat family protein [detail] 827918
Coexpressed
gene list		 [Coexpressed gene list for XRN3]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
262923_at
262923_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
262923_at
262923_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
262923_at
262923_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 843900      
Refseq ID (protein) NP_565114.1 


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