cis; CCGTGGG

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
no correspondence

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of CCGTGGG

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of CCGTGGG.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.46At4g3093050S ribosomal protein L21, mitochondrial (RPL21M) ((WRKY32)) WRKY
-0.45At1g76890trihelix DNA-binding protein / GT-2 factor (GT2) ((GT2)) Trihelix
0.44At3g57150dyskerin, putative / nucleolar protein NAP57, putative ((NAP57)) NAC
0.43At1g63100scarecrow transcription factor family protein GRAS

link to other 304 cis elements in ATTED

similar seq.
←CCGTGGG→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; CCCACGG
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
CCGTGGG1.000.06171
ACTCCGC0.690.08117
CAGCATG0.690.079
CTCCGCG0.680.07100
GCGTTCG0.670.0794
CCGAGCG0.610.08107