cis; CCGAGCG

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
no correspondence

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of CCGAGCG

[Help]
GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of CCGAGCG.

[Help]
correlTFfunction ((alias))*TF family
(link to AGRIS)
-0.43At5g08330TCP family transcription factor, putative TCP
0.43At5g38895zinc finger (C3HC4-type RING finger) family protein C3H
0.42At3g01970WRKY family transcription factor ((WRKY45)) WRKY
0.41At3g10500no apical meristem (NAM) family protein NAC
0.41At5g13080WRKY family transcription factor ((WRKY75)) WRKY

link to other 304 cis elements in ATTED

similar seq.
←CCGAGCG→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; CGCTCGG
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
CCGAGCG1.000.08107
ACCGCGT0.700.1098
CGCGTTT0.700.1193
TTACCCC0.690.07182
TCTTTCC0.690.0638
GCGTTCG0.680.0794
CCGCGTT0.680.1017
CGCGTTC0.680.06177
AATCCCA0.670.068
AACCGCG0.670.0985