cis; CGCGTTC

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
no correspondence

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of CGCGTTC

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of CGCGTTC.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.69At3g52800zinc finger (AN1-like) family protein C2H2
0.68At1g80840WRKY family transcription factor ((WRKY40)) WRKY
0.66At1g28370ERF domain protein 11 (ERF11) AP2-EREBP
0.64At1g22510zinc finger (C3HC4-type RING finger) family protein C3H
0.63At5g49520WRKY family transcription factor ((WRKY48)) WRKY
0.63At5g67300myb family transcription factor MYB
0.63At4g31800WRKY family transcription factor ((WRKY18)) WRKY
0.63At3g15210ethylene-responsive element-binding factor 4 (ERF4) ((ATERF4, RAP2.5)) AP2-EREBP
0.63At4g01250WRKY family transcription factor ((WRKY22)) WRKY
0.63At3g50060myb family transcription factor MYB
0.62At5g24590turnip crinkle virus-interacting protein / TCV-interacting protein (TIP) ((TIP)) NAC
0.62At2g38470WRKY family transcription factor ((WRKY33)) WRKY
0.61At1g27730zinc finger (C2H2 type) family protein (ZAT10) / salt-tolerance zinc finger protein (STZ) ((ZAT10)) C2H2
0.61At1g21910AP2 domain-containing transcription factor family protein AP2-EREBP
0.61At3g49530no apical meristem (NAM) family protein NAC

link to other 304 cis elements in ATTED

similar seq.
←CGCGTTC→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; GAACGCG
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
CGCGTTC1.000.06177
CCGCGTT0.880.1017
ACCGCGT0.850.1098
ACGCGTT0.840.1096
CGCGTTT0.840.1193
AACGCGT0.830.10127
ACGCGGT0.830.09141
ACGCGGA0.820.07116
ACGCGCT0.820.09111
TCCGCGT0.810.07156