cis; CGCGTTT

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
no correspondence

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of CGCGTTT

[Help]
GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of CGCGTTT.

[Help]
correlTFfunction ((alias))*TF family
(link to AGRIS)
0.73At1g28370ERF domain protein 11 (ERF11) AP2-EREBP
0.69At3g52800zinc finger (AN1-like) family protein C2H2
0.69At5g24590turnip crinkle virus-interacting protein / TCV-interacting protein (TIP) ((TIP)) NAC
0.68At1g80840WRKY family transcription factor ((WRKY40)) WRKY
0.68At1g22510zinc finger (C3HC4-type RING finger) family protein C3H
0.67At3g15210ethylene-responsive element-binding factor 4 (ERF4) ((ATERF4, RAP2.5)) AP2-EREBP
0.67At3g50060myb family transcription factor MYB
0.67At3g49530no apical meristem (NAM) family protein NAC
0.67At5g49520WRKY family transcription factor ((WRKY48)) WRKY
0.66At4g34410AP2 domain-containing transcription factor, putative AP2-EREBP
0.66At2g44840ethylene-responsive element-binding protein, putative AP2-EREBP
0.65At5g67300myb family transcription factor MYB
0.65At4g31800WRKY family transcription factor ((WRKY18)) WRKY
0.62At1g27730zinc finger (C2H2 type) family protein (ZAT10) / salt-tolerance zinc finger protein (STZ) ((ZAT10)) C2H2
0.61At1g12610DRE-binding protein, putative / CRT/DRE-binding factor, putative ((DDF1)) AP2-EREBP

link to other 304 cis elements in ATTED

similar seq.
←CGCGTTT→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; AAACGCG
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
CGCGTTT1.000.1193
ACGCGTT0.950.1096
AACCGCG0.950.0985
CCGCGTT0.940.1017
ACCGCGT0.940.1098
AACGCGT0.930.10127
ACGCGGT0.920.09141
AAACGCG0.900.07149
ACGCGTA0.900.1074
ATACGCG0.900.0639