cis; CCAAGCG


Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
no correspondence

CEG profile for position preference


CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of CCAAGCG

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GO IDterm-Log(p)number of
{A; genes in a GO}
numver of
{B; genes with this heptamer}
{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of CCAAGCG.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.47At5g38895zinc finger (C3HC4-type RING finger) family protein C3H
-0.46At4g23750AP2 domain-containing transcription factor, putative AP2-EREBP
0.46At3g01970WRKY family transcription factor ((WRKY45)) WRKY
0.46At4g36990heat shock factor protein 4 (HSF4) / heat shock transcription factor 4 (HSTF4) ((AT-HSFB1, ATHSF4, HSF4)) HSF
0.45At1g74410zinc finger (C3HC4-type RING finger) family protein C3H
0.45At3g02340zinc finger (C3HC4-type RING finger) family protein C3H
0.45At2g37150zinc finger (C3HC4-type RING finger) family protein C3H
0.44At3g04070no apical meristem (NAM) family protein NAC
0.43At1g63840zinc finger (C3HC4-type RING finger) family protein C3H
-0.43At2g02740transcription factor, putative WHIRLY
0.42At1g26800zinc finger (C3HC4-type RING finger) family protein C3H
0.42At3g04060no apical meristem (NAM) family protein NAC
0.42At1g53320F-box family protein / tubby family protein (TULP7) TUB
-0.42At2g31070TCP family transcription factor, putative TCP
-0.41At4g00180axial regulator YABBY3 (YABBY3) ((YAB3)) C2C2-YABBY

link to other 304 cis elements in ATTED

similar seq.
CCAAGCG
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; CGCTTGG
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
CCAAGCG1.000.0670
GCGAAGG0.810.0979
CAAGCGC0.750.0723
CCCTGGG0.710.06113
CCGTAGC0.700.07189
GCTGTAC0.670.0717
CCAGAAC0.660.06114
GCCACGG0.660.06150
TCCAGAA0.660.07104
GTTCGGG0.650.07139