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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT3G08840   D-alanine-D-alanine ligase family 
 ath-r.7   AT3G08840   D-alanine-D-alanine ligase family 
 ath-m.9   AT3G08840   D-alanine-D-alanine ligase family 
 ath-e.2   AT3G08840   D-alanine-D-alanine ligase family 
 ath-m.4.bio   AT3G08840   D-alanine-D-alanine ligase family 
 ath-m.4.hor   AT3G08840   D-alanine-D-alanine ligase family 
 ath-m.4.lig   AT3G08840   D-alanine-D-alanine ligase family 
 ath-m.4.str   AT3G08840   D-alanine-D-alanine ligase family 
 ath-m.4.tis   AT3G08840   D-alanine-D-alanine ligase family 
 bra-r.6   103859329   uncharacterized LOC103859329 
 bra-r.6   103830077   uncharacterized LOC103830077 
 bna-r.1   106430373   uncharacterized LOC106430373 
 bna-r.1   106353000   uncharacterized LOC106353000 
 bna-r.1   106442173   uncharacterized LOC106442173 
 ghi-r.1   107948973   D-alanine--D-alanine ligase 
 ghi-r.1   107899599   uncharacterized LOC107899599 
 cit-r.1   102620172   uncharacterized LOC102620172 
 gma-u.5   100819595   uncharacterized LOC100819595 
 gma-u.5   100775955   uncharacterized LOC100775955 
 vvi-u.5   100265424   uncharacterized LOC100265424 
 ppo-u.5   7468075   uncharacterized LOC7468075 
 mtr-u.5   11407566   uncharacterized LOC11407566 
 sly-u.5   104649147   uncharacterized LOC104649147 
 sly-u.5   101268046   uncharacterized LOC101268046 
 sot-r.1   102602208   uncharacterized LOC102602208 
 nta-r.1   107762573   uncharacterized LOC107762573 
 nta-r.1   107782046   uncharacterized LOC107782046 
 osa-u.5   4344370   uncharacterized LOC4344370 
 zma-u.5   100383342   D-alanine--D-alanine ligase family 
 tae-r.2   123187386   uncharacterized LOC123187386 
 tae-r.2   123051441   uncharacterized LOC123051441 
 tae-r.2   123043572   uncharacterized LOC123043572 
 hvu-r.1   123425193   uncharacterized LOC123425193 
 sbi-r.1   8077518   uncharacterized LOC8077518 
 sbi-r.1   8086409   uncharacterized LOC8086409 
 bdi-r.1   100840063   uncharacterized LOC100840063 
 cre-r.1   CHLRE_15g635650v5   uncharacterized protein 

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Top 50 coexpressed genes to AT3G08840 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G08840 (ath-u.5 coexpression data)

CoexMap"820031"


athAT3G08840 | Entrez gene ID : 820031      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 2 1 2 1 1 1 2 1 2 1 1 3 1 2 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0008716 [list] [network] D-alanine-D-alanine ligase activity  (1 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (321 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (945 genes)  IEA  
Protein NP_001319501.1 [sequence] [blastp]
NP_001319502.1 [sequence] [blastp]
NP_001326473.1 [sequence] [blastp]
NP_001326474.1 [sequence] [blastp]
NP_001326475.1 [sequence] [blastp]
NP_001326476.1 [sequence] [blastp]
NP_001326477.1 [sequence] [blastp]
NP_001326478.1 [sequence] [blastp]
NP_001326479.1 [sequence] [blastp]
NP_001326480.1 [sequence] [blastp]
NP_566334.1 [sequence] [blastp]
NP_974258.1 [sequence] [blastp]
NP_974259.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 4,  cyto_nucl 4  (predict for NP_001319501.1)
chlo 4,  nucl 3,  cyto 2,  cysk 1,  cyto_pero 1,  cysk_plas 1,  cyto_E.R. 1  (predict for NP_001319502.1)
cyto 4,  cysk 2,  cyto_nucl 2,  chlo 2,  cyto_pero 2,  cyto_E.R. 2  (predict for NP_001326473.1)
cyto 4,  chlo 2,  nucl 2,  cysk_plas 1,  plas 1,  cysk 1,  chlo_mito 1  (predict for NP_001326474.1)
chlo 4,  cyto 4,  nucl 1,  cysk 1,  cysk_plas 1  (predict for NP_001326475.1)
nucl 4,  chlo 3,  cyto_nucl 3,  cyto 2  (predict for NP_001326476.1)
chlo 4,  nucl 3,  cyto 2,  cysk 1,  cyto_pero 1,  cysk_plas 1,  cyto_E.R. 1  (predict for NP_001326477.1)
nucl 4,  cyto 3,  chlo 2,  cysk 1,  chlo_mito 1,  cysk_plas 1  (predict for NP_001326478.1)
nucl 4,  cyto 4,  cyto_nucl 4  (predict for NP_001326479.1)
cyto 4,  chlo 2,  nucl 2,  cyto_pero 2,  cyto_E.R. 2  (predict for NP_001326480.1)
nucl 4,  cyto 4,  cyto_nucl 4  (predict for NP_566334.1)
chlo 3,  nucl 3,  cyto 3,  cyto_nucl 3  (predict for NP_974258.1)
chlo 4,  nucl 3,  cyto 2,  cysk 1,  cyto_pero 1,  cysk_plas 1,  cyto_E.R. 1  (predict for NP_974259.1)
Subcellular
localization
TargetP
other 6,  chlo 3  (predict for NP_001319501.1)
other 6,  chlo 3  (predict for NP_001319502.1)
other 6,  chlo 3  (predict for NP_001326473.1)
other 6,  chlo 3  (predict for NP_001326474.1)
other 6,  chlo 3  (predict for NP_001326475.1)
other 6,  chlo 3  (predict for NP_001326476.1)
other 6,  chlo 3  (predict for NP_001326477.1)
other 6,  chlo 3  (predict for NP_001326478.1)
other 6,  chlo 3  (predict for NP_001326479.1)
other 6,  chlo 3  (predict for NP_001326480.1)
other 6,  chlo 3  (predict for NP_566334.1)
other 6,  chlo 3  (predict for NP_974258.1)
other 6,  chlo 3  (predict for NP_974259.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT3G08840
ath-r.7
for
AT3G08840
ath-m.9
for
AT3G08840
ath-e.2
for
AT3G08840
ath-m.4.bio
for
AT3G08840
ath-m.4.hor
for
AT3G08840
ath-m.4.lig
for
AT3G08840
ath-m.4.str
for
AT3G08840
ath-m.4.tis
for
AT3G08840
bra-r.6
for
103859329
bra-r.6
for
103830077
bna-r.1
for
106430373
bna-r.1
for
106353000
bna-r.1
for
106442173
ghi-r.1
for
107948973
ghi-r.1
for
107899599
cit-r.1
for
102620172
gma-u.5
for
100819595
gma-u.5
for
100775955
vvi-u.5
for
100265424
ppo-u.5
for
7468075
mtr-u.5
for
11407566
sly-u.5
for
104649147
sly-u.5
for
101268046
sot-r.1
for
102602208
nta-r.1
for
107762573
nta-r.1
for
107782046
osa-u.5
for
4344370
zma-u.5
for
100383342
tae-r.2
for
123187386
tae-r.2
for
123051441
tae-r.2
for
123043572
hvu-r.1
for
123425193
sbi-r.1
for
8077518
sbi-r.1
for
8086409
bdi-r.1
for
100840063
cre-r.1
for
CHLRE_15g635650v5


Ortholog ID: 7200
Species ath bra bra bna bna bna ghi ghi cit gma gma vvi ppo mtr sly sly sot nta nta osa zma tae tae tae hvu sbi sbi bdi cre
Symbol AT3G08840 LOC103859329 LOC103830077 LOC106430373 LOC106353000 LOC106451640 LOC107948973 LOC107899599 LOC102620172 LOC100819595 LOC100775955 LOC100265424 LOC7468075 LOC11407566 LOC104649147 LOC101268046 LOC102602208 LOC107762573 LOC107782046 LOC4344370 LOC100383342 LOC123187386 LOC123051441 LOC123043572 LOC123425193 LOC8077518 LOC8086409 LOC100840063 CHLRE_15g635650v5
Function* D-alanine-D-alanine ligase family uncharacterized LOC103859329 uncharacterized LOC103830077 uncharacterized LOC106430373 uncharacterized LOC106353000 uncharacterized LOC106451640 D-alanine--D-alanine ligase uncharacterized LOC107899599 uncharacterized LOC102620172 uncharacterized LOC100819595 uncharacterized LOC100775955 uncharacterized LOC100265424 uncharacterized LOC7468075 uncharacterized LOC11407566 uncharacterized LOC104649147 uncharacterized LOC101268046 uncharacterized LOC102602208 uncharacterized LOC107762573 uncharacterized LOC107782046 uncharacterized LOC4344370 D-alanine--D-alanine ligase family uncharacterized LOC123187386 uncharacterized LOC123051441 uncharacterized LOC123043572 uncharacterized LOC123425193 uncharacterized LOC8077518 uncharacterized LOC8086409 uncharacterized LOC100840063 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 2
bra03040 Spliceosome 2
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00380 Tryptophan metabolism 5
bna04082 Neuroactive ligand signaling 4
bna00460 Cyanoamino acid metabolism 2
bna00500 Starch and sucrose metabolism 2
bna00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00380 Tryptophan metabolism 10
bna04075 Plant hormone signal transduction 5
bna00460 Cyanoamino acid metabolism 2
bna00500 Starch and sucrose metabolism 2
bna00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00220 Arginine biosynthesis 2
gma00250 Alanine, aspartate and glutamate metabolism 2
gma00910 Nitrogen metabolism 2
gma00260 Glycine, serine and threonine metabolism 2
gma00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma02010 ABC transporters 4
gma00220 Arginine biosynthesis 2
gma00250 Alanine, aspartate and glutamate metabolism 2
gma00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03083 Polycomb repressive complex 3
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00410 beta-Alanine metabolism 3
mtr03020 RNA polymerase 2
mtr00240 Pyrimidine metabolism 2
mtr00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00010 Glycolysis / Gluconeogenesis 3
sly00020 Citrate cycle (TCA cycle) 3
sly00620 Pyruvate metabolism 3
sly00785 Lipoic acid metabolism 3
sly01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00790 Folate biosynthesis 2
nta01240 Biosynthesis of cofactors 2
nta00904 Diterpenoid biosynthesis 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00790 Folate biosynthesis 2
nta01240 Biosynthesis of cofactors 2
nta00904 Diterpenoid biosynthesis 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 5
osa00630 Glyoxylate and dicarboxylate metabolism 4
osa00260 Glycine, serine and threonine metabolism 2
osa00270 Cysteine and methionine metabolism 2
osa00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00052 Galactose metabolism 3
tae00511 Other glycan degradation 3
tae00531 Glycosaminoglycan degradation 3
tae00600 Sphingolipid metabolism 3
tae00604 Glycosphingolipid biosynthesis - ganglio series 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00620 Pyruvate metabolism 4
tae00052 Galactose metabolism 3
tae00511 Other glycan degradation 3
tae00531 Glycosaminoglycan degradation 3
tae00600 Sphingolipid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00052 Galactose metabolism 3
tae00511 Other glycan degradation 3
tae00531 Glycosaminoglycan degradation 3
tae00600 Sphingolipid metabolism 3
tae00604 Glycosphingolipid biosynthesis - ganglio series 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 3
sbi04142 Lysosome 2
sbi05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 4
sbi04142 Lysosome 2
sbi05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 2
bdi00100 Steroid biosynthesis 2
bdi00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820031 103859329 103830077 106430373 106353000 106451640 107948973 107899599 102620172 100819595 100775955 100265424 7468075 11407566 104649147 101268046 102602208 107762573 107782046 4344370 100383342 123187386 123051441 123043572 123425193 8077518 8086409 100840063 5726155
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