Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PPR40   pentatricopeptide (PPR) domain protein 40 
 ath-r.7   PPR40   pentatricopeptide (PPR) domain protein 40 
 ath-m.9   PPR40   pentatricopeptide (PPR) domain protein 40 
 ath-e.2   PPR40   pentatricopeptide (PPR) domain protein 40 
 ath-m.4.bio   PPR40   pentatricopeptide (PPR) domain protein 40 
 ath-m.4.hor   PPR40   pentatricopeptide (PPR) domain protein 40 
 ath-m.4.lig   PPR40   pentatricopeptide (PPR) domain protein 40 
 ath-m.4.str   PPR40   pentatricopeptide (PPR) domain protein 40 
 ath-m.4.tis   PPR40   pentatricopeptide (PPR) domain protein 40 
 bra-r.6   103839464   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 bna-r.1   125577381   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 bna-r.1   106390532   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 ghi-r.1   107933371   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 ghi-r.1   107888944   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 cit-r.1   102627213   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 gma-u.5   100800686   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 vvi-u.5   104879209   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 ppo-u.5   112328519   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 mtr-u.5   25501521   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 sly-u.5   101258690   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 sot-r.1   102604436   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 nta-r.1   107820499   uncharacterized LOC107820499 
 nta-r.1   107801826   uncharacterized LOC107801826 
 osa-u.5   4352501   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 zma-u.5   100383014   uncharacterized LOC100383014 
 tae-r.2   123102580   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 tae-r.2   123110766   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 tae-r.2   123119767   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 hvu-r.1   123400002   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 sbi-r.1   110437691   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 bdi-r.1   100823395   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 

close


Top 50 coexpressed genes to PPR40 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to PPR40 (ath-u.5 coexpression data)

CoexMap"820944"


athPPR40 | Entrez gene ID : 820944      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 1 1 1 1 1 1 2 1 1 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0042775 [list] [network] mitochondrial ATP synthesis coupled electron transport  (24 genes)  IMP  
GO:0006979 [list] [network] response to oxidative stress  (384 genes)  IMP  
GO:0009651 [list] [network] response to salt stress  (473 genes)  IMP  
GO:0009737 [list] [network] response to abscisic acid  (550 genes)  IMP  
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  IDA IMP ISM  
GO MF
Protein NP_001326054.1 [sequence] [blastp]
NP_188314.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 4,  nucl 1,  E.R. 1,  golg 1  (predict for NP_001326054.1)
chlo 9  (predict for NP_188314.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001326054.1)
chlo 8  (predict for NP_188314.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PPR40
ath-r.7
for
PPR40
ath-m.9
for
PPR40
ath-e.2
for
PPR40
ath-m.4.bio
for
PPR40
ath-m.4.hor
for
PPR40
ath-m.4.lig
for
PPR40
ath-m.4.str
for
PPR40
ath-m.4.tis
for
PPR40
bra-r.6
for
103839464
bna-r.1
for
125577381
bna-r.1
for
106390532
ghi-r.1
for
107933371
ghi-r.1
for
107888944
cit-r.1
for
102627213
gma-u.5
for
100800686
vvi-u.5
for
104879209
ppo-u.5
for
112328519
mtr-u.5
for
25501521
sly-u.5
for
101258690
sot-r.1
for
102604436
nta-r.1
for
107820499
nta-r.1
for
107801826
osa-u.5
for
4352501
zma-u.5
for
100383014
tae-r.2
for
123102580
tae-r.2
for
123110766
tae-r.2
for
123119767
hvu-r.1
for
123400002
sbi-r.1
for
110437691
bdi-r.1
for
100823395


Ortholog ID: 11306
Species ath bra bna bna ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol PPR40 LOC103839464 LOC125577381 LOC106390532 LOC107933371 LOC107888944 LOC102627213 LOC100800686 LOC104879209 LOC112328519 LOC25501521 LOC101258690 LOC102604436 LOC107820499 LOC107801826 LOC4352501 LOC100383014 LOC123102580 LOC123110766 LOC123119767 LOC123400002 LOC110437691 LOC100823395
Function* pentatricopeptide (PPR) domain protein 40 putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial uncharacterized LOC107820499 uncharacterized LOC107801826 putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial uncharacterized LOC100383014 putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
bna03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 3
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 3
sot04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 5
hvu00970 Aminoacyl-tRNA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820944 103839464 125577381 106390532 107933371 107888944 102627213 100800686 104879209 112328519 25501521 101258690 102604436 107820499 107801826 4352501 100383014 123102580 123110766 123119767 123400002 110437691 100823395
The preparation time of this page was 0.2 [sec].