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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123102580   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 tae-r.2   123110766   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 tae-r.2   123119767   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 hvu-r.1   123400002   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 bdi-r.1   100823395   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 osa-u.5   4352501   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 zma-u.5   100383014   uncharacterized LOC100383014 
 sbi-r.1   110437691   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 ath-u.5   PPR40   pentatricopeptide (PPR) domain protein 40 
 gma-u.5   100800686   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 sly-u.5   101258690   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 bra-r.6   103839464   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 vvi-u.5   104879209   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 ppo-u.5   112328519   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 mtr-u.5   25501521   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 ghi-r.1   107933371   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 ghi-r.1   107888944   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 bna-r.1   106390532   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 bna-r.1   125577381   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 sot-r.1   102604436   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 cit-r.1   102627213   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 nta-r.1   107820499   uncharacterized LOC107820499 
 nta-r.1   107801826   uncharacterized LOC107801826 

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Top 50 coexpressed genes to 123102580 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123102580 (tae-r.2 coexpression data)

CoexMap"123102580"


taeLOC123102580 | Entrez gene ID : 123102580    
Species tae hvu bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 3 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 2 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0031930 [list] [network] mitochondria-nucleus signaling pathway  (40 genes)  IEA  
GO:0010019 [list] [network] chloroplast-nucleus signaling pathway  (43 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (1890 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (16249 genes)  IEA  
Protein XP_044379913.1 [sequence] [blastp]
XP_044379914.1 [sequence] [blastp]
XP_044379915.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 6,  chlo 4  (predict for XP_044379913.1)
mito 6,  chlo 4  (predict for XP_044379914.1)
mito 6,  chlo 4  (predict for XP_044379915.1)
Subcellular
localization
TargetP
mito 8  (predict for XP_044379913.1)
mito 8  (predict for XP_044379914.1)
mito 8  (predict for XP_044379915.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123102580
tae-r.2
for
123110766
tae-r.2
for
123119767
hvu-r.1
for
123400002
bdi-r.1
for
100823395
osa-u.5
for
4352501
zma-u.5
for
100383014
sbi-r.1
for
110437691
ath-u.5
for
PPR40
gma-u.5
for
100800686
sly-u.5
for
101258690
bra-r.6
for
103839464
vvi-u.5
for
104879209
ppo-u.5
for
112328519
mtr-u.5
for
25501521
ghi-r.1
for
107933371
ghi-r.1
for
107888944
bna-r.1
for
106390532
bna-r.1
for
125577381
sot-r.1
for
102604436
cit-r.1
for
102627213
nta-r.1
for
107820499
nta-r.1
for
107801826


Ortholog ID: 11306
Species tae tae tae hvu bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi ghi bna bna sot cit nta nta
Symbol LOC123102580 LOC123110766 LOC123119767 LOC123400002 LOC100823395 LOC4352501 LOC100383014 LOC110437691 PPR40 LOC100800686 LOC101258690 LOC103839464 LOC104879209 LOC112328519 LOC25501521 LOC107933371 LOC107888944 LOC106390532 LOC125577381 LOC102604436 LOC102627213 LOC107820499 LOC107801826
Function* putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial uncharacterized LOC100383014 putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial pentatricopeptide (PPR) domain protein 40 putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial uncharacterized LOC107820499 uncharacterized LOC107801826
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 5
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 3
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
bna03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 3
sot04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00561 Glycerolipid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123102580 123110766 123119767 123400002 100823395 4352501 100383014 110437691 820944 100800686 101258690 103839464 104879209 112328519 25501521 107933371 107888944 106390532 125577381 102604436 102627213 107820499 107801826
The preparation time of this page was 2.7 [sec].