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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107933371   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 ath-u.5   PPR40   pentatricopeptide (PPR) domain protein 40 
 gma-u.5   100800686   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 vvi-u.5   104879209   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 ppo-u.5   112328519   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 mtr-u.5   25501521   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 sly-u.5   101258690   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 osa-u.5   4352501   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 zma-u.5   100383014   uncharacterized LOC100383014 

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Top 50 coexpressed genes to 107933371 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107933371 (ghi-r.1 coexpression data)

CoexMap"107933371"


ghiLOC107933371 | Entrez gene ID : 107933371    
Species ghi ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi sot nta cre tae
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_040944480.1 [sequence] [blastp]
XP_040944481.1 [sequence] [blastp]
XP_040944482.1 [sequence] [blastp]
XP_040944483.1 [sequence] [blastp]
XP_040944484.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 3,  extr 3,  cyto_E.R. 2,  chlo 1,  nucl 1,  plas 1,  cysk 1,  golg 1,  cysk_nucl 1,  nucl_plas 1,  golg_plas 1,  cysk_plas 1  (predict for XP_040944480.1)
nucl 3,  cyto 2,  cyto_E.R. 1,  chlo 1,  mito 1,  chlo_mito 1,  cysk_nucl 1  (predict for XP_040944481.1)
nucl 3,  cyto 2,  cyto_E.R. 1,  chlo 1,  mito 1,  chlo_mito 1,  cysk_nucl 1  (predict for XP_040944482.1)
nucl 3,  cyto 2,  cyto_E.R. 1,  chlo 1,  mito 1,  chlo_mito 1,  cysk_nucl 1  (predict for XP_040944483.1)
nucl 3,  cyto 2,  cyto_E.R. 1,  chlo 1,  mito 1,  chlo_mito 1,  cysk_nucl 1  (predict for XP_040944484.1)
Subcellular
localization
TargetP
other 9  (predict for XP_040944480.1)
other 8  (predict for XP_040944481.1)
other 8  (predict for XP_040944482.1)
other 8  (predict for XP_040944483.1)
other 8  (predict for XP_040944484.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107933371
ath-u.5
for
PPR40
gma-u.5
for
100800686
vvi-u.5
for
104879209
ppo-u.5
for
112328519
mtr-u.5
for
25501521
sly-u.5
for
101258690
osa-u.5
for
4352501
zma-u.5
for
100383014


Ortholog ID: 11306
Species ghi ghi ath bra bna bna cit gma vvi ppo mtr sly sot nta nta osa zma tae tae hvu sbi bdi
Symbol LOC107888944 LOC107933371 PPR40 LOC103839464 LOC106390532 LOC125577381 LOC102627213 LOC100800686 LOC104879209 LOC112328519 LOC25501521 LOC101258690 LOC102604436 LOC107820499 LOC107801826 LOC4352501 LOC100383014 LOC123110766 LOC123102580 LOC123400002 LOC110437691 LOC100823395
Function* putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial pentatricopeptide (PPR) domain protein 40 putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial uncharacterized LOC107820499 uncharacterized LOC107801826 putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial uncharacterized LOC100383014 putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
bna03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 3
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 3
sot04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 5
hvu00970 Aminoacyl-tRNA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107888944 107933371 820944 103839464 106390532 125577381 102627213 100800686 104879209 112328519 25501521 101258690 102604436 107820499 107801826 4352501 100383014 123110766 123102580 123400002 110437691 100823395
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