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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100800686   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 gma-r.7   100800686   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 mtr-u.5   25501521   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 ppo-u.5   112328519   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 ath-u.5   PPR40   pentatricopeptide (PPR) domain protein 40 
 vvi-u.5   104879209   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 sly-u.5   101258690   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 osa-u.5   4352501   putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial 
 zma-u.5   100383014   uncharacterized LOC100383014 

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Top 50 coexpressed genes to 100800686 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100800686 (gma-u.5 coexpression data)

CoexMap"100800686"


gmaLOC100800686 | Entrez gene ID : 100800686    
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 2 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (7243 genes)  IEA  
Protein XP_040874383.1 [sequence] [blastp]
XP_040874384.1 [sequence] [blastp]
XP_040874385.1 [sequence] [blastp]
XP_040874386.1 [sequence] [blastp]
XP_040874387.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 3,  mito 1,  cyto_nucl 1,  cysk_nucl 1  (predict for XP_040874383.1)
nucl 4,  chlo 3,  mito 1,  cyto_nucl 1,  cysk_nucl 1  (predict for XP_040874384.1)
nucl 4,  chlo 3,  mito 1,  cyto_nucl 1,  cysk_nucl 1  (predict for XP_040874385.1)
nucl 4,  chlo 3,  mito 1,  cyto_nucl 1,  cysk_nucl 1  (predict for XP_040874386.1)
chlo 4,  nucl 3,  mito 1,  nucl_plas 1  (predict for XP_040874387.1)
Subcellular
localization
TargetP
chlo 5  (predict for XP_040874383.1)
chlo 5  (predict for XP_040874384.1)
chlo 5  (predict for XP_040874385.1)
chlo 5  (predict for XP_040874386.1)
chlo 5  (predict for XP_040874387.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100800686

.
gma-r.7
for
100800686

.
mtr-u.5
for
25501521

.
ppo-u.5
for
112328519

.
ath-u.5
for
PPR40

.
vvi-u.5
for
104879209

.
sly-u.5
for
101258690

.
osa-u.5
for
4352501

.
zma-u.5
for
100383014

.


Ortholog ID: 11306
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol PPR40 LOC100800686 LOC101258690 LOC4352501 LOC100383014 LOC103839464 LOC104879209 LOC112328519 LOC25501521 LOC123110766 LOC123102580 LOC123400002 LOC107888944 LOC107933371 LOC106390532 LOC125577381 LOC110437691 LOC102604436 LOC102627213 LOC100823395 LOC107820499 LOC107801826
Function* pentatricopeptide (PPR) domain protein 40 putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial uncharacterized LOC100383014 putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial uncharacterized LOC107820499 uncharacterized LOC107801826
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 3
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 5
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
bna03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 3
sot04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00561 Glycerolipid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820944 100800686 101258690 4352501 100383014 103839464 104879209 112328519 25501521 123110766 123102580 123400002 107888944 107933371 106390532 125577381 110437691 102604436 102627213 100823395 107820499 107801826
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