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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   SCL1   SCARECROW-like 1 
 ath-r.7   SCL1   SCARECROW-like 1 
 ath-m.9   SCL1   SCARECROW-like 1 
 ath-e.2   SCL1   SCARECROW-like 1 
 ath-m.4.bio   SCL1   SCARECROW-like 1 
 ath-m.4.hor   SCL1   SCARECROW-like 1 
 ath-m.4.lig   SCL1   SCARECROW-like 1 
 ath-m.4.str   SCL1   SCARECROW-like 1 
 ath-m.4.tis   SCL1   SCARECROW-like 1 
 gma-u.5   100807048   scarecrow-like protein 1 
 gma-u.5   100798897   scarecrow-like protein 1 
 gma-u.5   100796434   scarecrow-like protein 1 
 vvi-u.5   100253954   scarecrow-like protein 1 
 vvi-u.5   100854518   scarecrow-like protein 1 
 ppo-u.5   18099612   scarecrow-like protein 1 
 ppo-u.5   7466426   scarecrow-like protein 1 
 mtr-u.5   25482425   scarecrow-like protein 1 
 mtr-u.5   25489758   scarecrow-like protein 1 
 sly-u.5   GRAS6   GRAS6 protein 
 osa-u.5   4324850   scarecrow-like protein 1 
 zma-u.5   103630377   scarecrow-like protein 1 

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Top 50 coexpressed genes to SCL1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SCL1 (ath-u.5 coexpression data)

CoexMap"838743"


athSCL1 | Entrez gene ID : 838743      
Species ath gma vvi ppo mtr sly osa zma sot hvu tae cit sbi ghi cre bna nta bdi bra
Paralog 9 3 2 2 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  TAS  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0000976 [list] [network] transcription cis-regulatory region binding  (716 genes)  IPI  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS  
Protein NP_173566.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto_nucl 5,  cyto 3  (predict for NP_173566.1)
Subcellular
localization
TargetP
mito 5,  other 3  (predict for NP_173566.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
SCL1

.
ath-r.7
for
SCL1

.
ath-m.9
for
SCL1

.
ath-e.2
for
SCL1

.
ath-m.4.bio
for
SCL1

.
ath-m.4.hor
for
SCL1

.
ath-m.4.lig
for
SCL1

.
ath-m.4.str
for
SCL1

.
ath-m.4.tis
for
SCL1

.
gma-u.5
for
100807048

.
gma-u.5
for
100798897

.
gma-u.5
for
100796434

.
vvi-u.5
for
100253954

.
vvi-u.5
for
100854518

.
ppo-u.5
for
18099612

.
ppo-u.5
for
7466426

.
mtr-u.5
for
25482425

.
mtr-u.5
for
25489758

.
sly-u.5
for
GRAS6

.
osa-u.5
for
4324850

.
zma-u.5
for
103630377

.


Ortholog ID: 6135
Species ath gma gma sly osa zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna sbi sbi sot cit bdi nta nta
Symbol SCL1 LOC100796434 LOC100788103 GRAS6 LOC4324850 LOC103630377 LOC103829376 LOC103872980 LOC100253954 LOC100854518 LOC18099612 LOC7466426 LOC25489758 LOC25482425 LOC123071826 LOC123062954 LOC123445132 LOC107910415 LOC107897112 LOC106376448 LOC106348605 LOC110433963 LOC8076981 LOC102601859 LOC102611655 LOC100821689 LOC107819615 LOC107796430
Function* SCARECROW-like 1 scarecrow-like protein 1 scarecrow-like protein 1 GRAS6 protein scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04016 MAPK signaling pathway - plant 2
gma04075 Plant hormone signal transduction 2
gma04626 Plant-pathogen interaction 2
gma02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04016 MAPK signaling pathway - plant 2
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04148 Efferocytosis 2
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00010 Glycolysis / Gluconeogenesis 2
mtr00030 Pentose phosphate pathway 2
mtr00051 Fructose and mannose metabolism 2
mtr00052 Galactose metabolism 2
mtr01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04136 Autophagy - other 2
nta03030 DNA replication 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04136 Autophagy - other 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838743 100796434 100788103 100037499 4324850 103630377 103829376 103872980 100253954 100854518 18099612 7466426 25489758 25482425 123071826 123062954 123445132 107910415 107897112 106376448 106348605 110433963 8076981 102601859 102611655 100821689 107819615 107796430
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