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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107952029   scarecrow-like protein 1 
 ghi-r.1   107910415   scarecrow-like protein 1 
 ghi-r.1   107914128   scarecrow-like protein 1 
 ghi-r.1   107897112   scarecrow-like protein 1 
 ath-u.5   SCL1   SCARECROW-like 1 
 bra-r.6   103872980   scarecrow-like protein 1 
 bra-r.6   103829376   scarecrow-like protein 1 
 bna-r.1   106347358   scarecrow-like protein 1 
 bna-r.1   106348605   scarecrow-like protein 1 
 bna-r.1   106376448   scarecrow-like protein 1 
 cit-r.1   102611655   scarecrow-like protein 1 
 gma-u.5   100807048   scarecrow-like protein 1 
 gma-u.5   100798897   scarecrow-like protein 1 
 gma-u.5   100796434   scarecrow-like protein 1 
 vvi-u.5   100854518   scarecrow-like protein 1 
 vvi-u.5   100253954   scarecrow-like protein 1 
 ppo-u.5   18099612   scarecrow-like protein 1 
 ppo-u.5   7466426   scarecrow-like protein 1 
 mtr-u.5   25482425   scarecrow-like protein 1 
 mtr-u.5   25489758   scarecrow-like protein 1 
 sly-u.5   GRAS6   GRAS6 protein 
 sot-r.1   102601859   scarecrow-like protein 1 
 nta-r.1   107819615   scarecrow-like protein 1 
 nta-r.1   107796430   scarecrow-like protein 1 
 osa-u.5   4324850   scarecrow-like protein 1 
 zma-u.5   103630377   scarecrow-like protein 1 
 tae-r.2   123080146   scarecrow-like protein 1 
 tae-r.2   123071826   scarecrow-like protein 1 
 tae-r.2   123062954   scarecrow-like protein 1 
 hvu-r.1   123445132   scarecrow-like protein 1 
 sbi-r.1   8076981   scarecrow-like protein 1 
 sbi-r.1   110433963   scarecrow-like protein 1 
 bdi-r.1   100821689   scarecrow-like protein 1 

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Top 50 coexpressed genes to 107952029 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107952029 (ghi-r.1 coexpression data)

CoexMap"107952029"


ghiLOC107952029 | Entrez gene ID : 107952029    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 1 2 3 1 3 2 2 2 1 1 2 1 1 3 1 2 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (4318 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO MF
GO:0043565 [list] [network] sequence-specific DNA binding  (1947 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (3140 genes)  IEA  
Protein XP_040947086.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 4,  chlo_mito 4  (predict for XP_040947086.1)
Subcellular
localization
TargetP
other 4,  mito 3  (predict for XP_040947086.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107952029
ghi-r.1
for
107910415
ghi-r.1
for
107914128
ghi-r.1
for
107897112
ath-u.5
for
SCL1
bra-r.6
for
103872980
bra-r.6
for
103829376
bna-r.1
for
106347358
bna-r.1
for
106348605
bna-r.1
for
106376448
cit-r.1
for
102611655
gma-u.5
for
100807048
gma-u.5
for
100798897
gma-u.5
for
100796434
vvi-u.5
for
100854518
vvi-u.5
for
100253954
ppo-u.5
for
18099612
ppo-u.5
for
7466426
mtr-u.5
for
25482425
mtr-u.5
for
25489758
sly-u.5
for
GRAS6
sot-r.1
for
102601859
nta-r.1
for
107819615
nta-r.1
for
107796430
osa-u.5
for
4324850
zma-u.5
for
103630377
tae-r.2
for
123080146
tae-r.2
for
123071826
tae-r.2
for
123062954
hvu-r.1
for
123445132
sbi-r.1
for
8076981
sbi-r.1
for
110433963
bdi-r.1
for
100821689


Ortholog ID: 6135
Species ghi ghi ghi ath bra bra bna bna bna cit gma gma gma vvi vvi ppo ppo mtr mtr sly sot nta nta osa zma tae tae tae hvu sbi sbi bdi
Symbol LOC107910415 LOC107914128 LOC107897112 SCL1 LOC103872980 LOC103829376 LOC106347358 LOC106348605 LOC106376448 LOC102611655 LOC100807048 LOC100796434 LOC100788103 LOC100854518 LOC100253954 LOC18099612 LOC7466426 LOC25482425 LOC25489758 GRAS6 LOC102601859 LOC107819615 LOC107796430 LOC4324850 LOC103630377 LOC123080146 LOC123071826 LOC123062954 LOC123445132 LOC8076981 LOC110433963 LOC100821689
Function* scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 SCARECROW-like 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 GRAS6 protein scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1 scarecrow-like protein 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04148 Efferocytosis 2
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00564 Glycerophospholipid metabolism 2
gma00592 alpha-Linolenic acid metabolism 2
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04016 MAPK signaling pathway - plant 2
gma04075 Plant hormone signal transduction 2
gma04626 Plant-pathogen interaction 2
gma02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00010 Glycolysis / Gluconeogenesis 2
mtr00030 Pentose phosphate pathway 2
mtr00051 Fructose and mannose metabolism 2
mtr00052 Galactose metabolism 2
mtr01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04136 Autophagy - other 2
nta03030 DNA replication 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04016 MAPK signaling pathway - plant 2
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 3
tae04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107910415 107914128 107897112 838743 103872980 103829376 106347358 106348605 106376448 102611655 100807048 100796434 100788103 100854518 100253954 18099612 7466426 25482425 25489758 100037499 102601859 107819615 107796430 4324850 103630377 123080146 123071826 123062954 123445132 8076981 110433963 100821689
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